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help > Automatic annotation of nuclei in C. elegans
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Aug 9, 2018 02:08 PM | Nils Kalbfuß
Automatic annotation of nuclei in C. elegans
Hi,
I would like to automatically annotate nuclei in L1 larvae based on the publication "A 3D digital atlas of C. elegans and its application to single-cell analyses". To this time, the pipeline was in Matlab code ("CellExplorer"), but it should be integrated in Vaa3D now. Is it possible to send me a dataset that works, so that I could try out the C. elegans plugins? That would be great! Thanks!
Best,
Nils
I would like to automatically annotate nuclei in L1 larvae based on the publication "A 3D digital atlas of C. elegans and its application to single-cell analyses". To this time, the pipeline was in Matlab code ("CellExplorer"), but it should be integrated in Vaa3D now. Is it possible to send me a dataset that works, so that I could try out the C. elegans plugins? That would be great! Thanks!
Best,
Nils