help > Neuron Tracer in Vaa3d
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Sep 11, 2018 10:09 AM | sui yuan
Neuron Tracer in Vaa3d
Hi!
I have been trying Vaa3D (v3.458 for Windows) to trace neurons. I found when I open the image stacks (.tif) and then use the smartTracing (Plug-in -> neuron_tracing -> smartTrace) to trace the neurons in the images, Vaa3D make an error: "Failed to read images files." How would I go about doing this?
Any help is much appreciated!
Best,
Jie
I have been trying Vaa3D (v3.458 for Windows) to trace neurons. I found when I open the image stacks (.tif) and then use the smartTracing (Plug-in -> neuron_tracing -> smartTrace) to trace the neurons in the images, Vaa3D make an error: "Failed to read images files." How would I go about doing this?
Any help is much appreciated!
Best,
Jie
Sep 11, 2018 04:09 PM | Zhi Zhou
RE: Neuron Tracer in Vaa3d
I don't have such issue on my
Windows machine using v3.458. Could you send this tif image to us
for testing? Thanks.
Zhi
Originally posted by sui yuan:
Zhi
Originally posted by sui yuan:
Hi!
I have been trying Vaa3D (v3.458 for Windows) to trace neurons. I found when I open the image stacks (.tif) and then use the smartTracing (Plug-in -> neuron_tracing -> smartTrace) to trace the neurons in the images, Vaa3D make an error: "Failed to read images files." How would I go about doing this?
Any help is much appreciated!
Best,
Jie
I have been trying Vaa3D (v3.458 for Windows) to trace neurons. I found when I open the image stacks (.tif) and then use the smartTracing (Plug-in -> neuron_tracing -> smartTrace) to trace the neurons in the images, Vaa3D make an error: "Failed to read images files." How would I go about doing this?
Any help is much appreciated!
Best,
Jie
Sep 12, 2018 03:09 AM | sui yuan
RE: Neuron Tracer in Vaa3d
Thanks for replying me. Here is the test image.
Sep 12, 2018 05:09 PM | Zhi Zhou
RE: Neuron Tracer in Vaa3d
I don't have such error message. However, smart tracing may not
perform good result on this testing image. My suggestion is to try
all plugins under neuron_tracing menu and find the best one to
use.
Originally posted by sui yuan:
Originally posted by sui yuan:
Thanks for replying me. Here is the test
image.
Sep 13, 2018 02:09 PM | sui yuan
RE: Neuron Tracer in Vaa3d
Thank you for your help. Could you please help me to test another
image? I encountered the same problem when testing this image.
If you can test it successfully, could you please send me the
reconstruction results? Thank you very much!
Sep 13, 2018 11:09 PM | Zhi Zhou
RE: Neuron Tracer in Vaa3d
Please try different tracing plugins
on your testing image. If you have questions about how to use some
particular plugins, please let me know.
Originally posted by sui yuan:
Originally posted by sui yuan:
Thank you for your help. Could you please help
me to test another image? I encountered the same problem when
testing this image. If you can test it successfully, could you
please send me the reconstruction results? Thank you very
much!