help > importing ICA as ROI
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Oct 9, 2018 09:10 PM | brian greeley
importing ICA as ROI
I have run 1st level group-ICA analysis and there are a few
components that I would like to use as network ROIs in a
seed-to-voxel analysis. I have saved the 3 ROIs of interest as
parcellation ROI files, added the 3 components as ROIs in the setup
menu, but they don't show up as a potential ROI in the 1st level
analysis. Am I doing this incorrectly? Any help would be much
appreciated.
Thanks
Thanks
Oct 9, 2018 11:10 PM | Alfonso Nieto-Castanon - Boston University
RE: importing ICA as ROI
Hi,
You might just need to propagate those changes in the Setup tab all the way to the first-level analysis tab. To do this, in the Setup tab click 'Done', and then select the option that reads "do not overwrite (skip already processed subjects/seeds)" before clicking on 'Start' (so that only the new ROIs are being processed), and, after this finishes, do the same thing in the 'Denoising' tab (click 'Done', select 'do not overwrite'). After that you should see your new ROIs being offered as an option for any existing or new first-level analysis.
Hope this helps
Alfonso
Originally posted by brian greeley:
You might just need to propagate those changes in the Setup tab all the way to the first-level analysis tab. To do this, in the Setup tab click 'Done', and then select the option that reads "do not overwrite (skip already processed subjects/seeds)" before clicking on 'Start' (so that only the new ROIs are being processed), and, after this finishes, do the same thing in the 'Denoising' tab (click 'Done', select 'do not overwrite'). After that you should see your new ROIs being offered as an option for any existing or new first-level analysis.
Hope this helps
Alfonso
Originally posted by brian greeley:
I have run 1st level group-ICA analysis and
there are a few components that I would like to use as network ROIs
in a seed-to-voxel analysis. I have saved the 3 ROIs of interest as
parcellation ROI files, added the 3 components as ROIs in the setup
menu, but they don't show up as a potential ROI in the 1st level
analysis. Am I doing this incorrectly? Any help would be much
appreciated.
Thanks
Thanks
Oct 11, 2018 10:10 PM | brian greeley
RE: importing ICA as ROI
Thanks for the suggestion. Ended up working.