open-discussion > Hypothalamus in NMI space
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Jan 28, 2019  09:01 AM | leemccarthyn
Hypothalamus in NMI space
Hi neuroimage experts

I need to use a ROI of the hypothalamus in my analysis, but, i don't find a Atlas in NMI space with this subcortical structure. Any suggestions?
Jan 29, 2019  06:01 AM | Daniel Martins
RE: Hypothalamus in NMI space
Hi there

I normally use the one from this high-resolution atlas of subcortical nuclei.

https://www.nature.com/articles/sdata201...

BW
Jan 29, 2019  06:01 AM | guillaume auzias
RE: Hypothalamus in NMI space
Hi,

we did it manually on the high resolution (0.5mm3) images from Colin 27 (http://www.bic.mni.mcgill.ca/ServicesAtl...), which are in the MNI space.
See the following paper for more details:

https://hal-amu.archives-ouvertes.fr/hal...

Please contact the corresponding author using the email given in the paper, we are open for sharing.
Jan 29, 2019  09:01 AM | Jun Yi Wang
RE: Hypothalamus in NMIspace
I used the coronal slice anterior to the temporal stem for tracking the uncinate fasciculus. See the following paper supplement for details:

https://www.sciencedirect.com/science/ar...

[cid:b019a069-3d3a-42a6-96ca-8dbf4da6b375]

Jun Yi Wang