open-discussion > Using DTI to plan a DBS surgery - Trackvis
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Jan 29, 2019  04:01 AM | neuronerd
Using DTI to plan a DBS surgery - Trackvis
Hi all,

I'm trying to plan a DBS surgery using an ROI generated in Trackvis using DTI. I can't seem to save the ROI as anything other than a .scene file. Does anyone know a way I can get this ROI as a Nifti or something I can use?

Thanks!!
Jan 29, 2019  05:01 AM | Martin Styner
RE: Using DTI to plan a DBS surgery - Trackvis
Originally posted by neuronerd:
Hi all,

I'm trying to plan a DBS surgery using an ROI generated in Trackvis using DTI. I can't seem to save the ROI as anything other than a .scene file. Does anyone know a way I can get this ROI as a Nifti or something I can use?

Thanks!!
Not sure this is the right forum for your question (as this is really about DTIPrep, i.e. QC of DTI/dMRI data), as my lab does not use Trackvis, but rather performs tractography in 3D Slicer.
Martin
Jan 31, 2019  05:01 AM | neuronerd
RE: Using DTI to plan a DBS surgery - Trackvis
Thanks Martin!
Feb 21, 2019  06:02 AM | Rachel Steiner - University of Wisconsin - Madison
RE: Using DTI to plan a DBS surgery - Trackvis
Originally posted by neuronerd:
Thanks Martin!


Yes I was going to suggest Slicer for your particular needs since the interactive tracking (fiducicial tracking) feature is effectively designed for potential applications like surgical planning. As you move the seed or fiducial or roi, the track changes in real time. Let me know if you’d like more information. It’s a very cool tool with many capabilities. check it out.