> Thanks for such a quick response! I'm running the Conn default
> preprocessing pipeline. The functional input files are all named
> "dana_pXXX_tp1_resting_state.nii.gz", where the XXX is a number from 001
> to 999. I'm actually selecting the files directly using the Conn gui. I
> just downloaded Conn, so I wanted to try everything manually first, before
> writing scripts. It seems like the program is occasionally getting confused
> about the prefixes. I just ran it again for one of the same subjects that
> failed before and now it was able to complete the full preprocessing
> pipeline, creating "...resting_state_uw" and then "centering_meanu...",
> then "meanu...", then "u...", then "au...", then "y_meanu", then
> "wmeanu...", then "wau", then "swau..."
>
Is there something with the names? Thank you!