open-discussion > co-registration issue
Feb 20, 2017  04:02 PM | Jeongchul Kim
co-registration issue
Hello,

I'm working on rhesus monkey brain MRI analysis and I've download some images from https://data.kitware.com/#collection/54b...
But, I found that T1/T2 images have different orientation and image origins from FA/MD images.
My purpose is to co-register estimated FA/MD images to T1 image space.
I've tried to align using FSL flirt, but I was not able to do it due do background noise and skull without manual skull stripping of FA/MD images.

So, I'd like to ask you whether there are skull-stripped FA/MD images or original DICOM images are available for reprocessing.
Additionally, do you have Fiedlmap images for distortion correction?
Hope I can get some advice on rhesus monkey image analysis.
Thank you.

jeongchul.

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TitleAuthorDate
co-registration issue
Jeongchul Kim Feb 20, 2017
Jeongchul Kim Feb 22, 2017
Martin Styner Feb 20, 2017