questions
questions > dcm2niix Image Flip
May 17, 2017 09:05 PM | Anderson Napolitano - The University of New Mexico
dcm2niix Image Flip
Hello Everyone,
I am trying to convert my dicom files using dcm2niix version v1.0.20170429 and unfortunately I keep getting flipped data in voxel space. Flip happens for both pre-clinical and clinical data, invariant of the scanner (tried for both Bruker 70/30 USR and Siemens Triotim respectively). The command that I've been running is as follows:
./dcm2niix -s y -p n -o 'output/dir' 'path/to/dicom/file'
The flip seems to happen along the same axis for both clinical and pre-clinical data's voxel space. I've verified such flip on nibabel. Has anyone encountered this problem before? Any help would be greatly appreciated.
Thank you in advance.
Regards,
Anderson Napolitano
I am trying to convert my dicom files using dcm2niix version v1.0.20170429 and unfortunately I keep getting flipped data in voxel space. Flip happens for both pre-clinical and clinical data, invariant of the scanner (tried for both Bruker 70/30 USR and Siemens Triotim respectively). The command that I've been running is as follows:
./dcm2niix -s y -p n -o 'output/dir' 'path/to/dicom/file'
The flip seems to happen along the same axis for both clinical and pre-clinical data's voxel space. I've verified such flip on nibabel. Has anyone encountered this problem before? Any help would be greatly appreciated.
Thank you in advance.
Regards,
Anderson Napolitano
Threaded View
Title | Author | Date |
---|---|---|
Anderson Napolitano | May 17, 2017 | |
Anderson Napolitano | May 18, 2017 | |
Chris Rorden | May 19, 2017 | |
Lindsay Quandt | Aug 15, 2017 | |
Chris Rorden | Aug 19, 2017 | |
Chris Rorden | Aug 16, 2017 | |
Anderson Napolitano | May 19, 2017 | |
Chris Rorden | May 18, 2017 | |
Anderson Napolitano | May 18, 2017 | |