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open-discussion > Convertion problems
Jun 7, 2017 05:06 PM | afouto - ISR - IST
Convertion problems
Hi,
I did some preprocessing steps on my diffusion data using FSL. More specifically, eddy-current distortions were corrected using FSL's eddy and then tensor fitting was performed using FSL's dtifit. At this stage I would like to perform an outliers detection with DTIPrep before starting Glm's analysis. However, I'm having trouble with the first stage of the convertion to Nrrd. I'm using Slicer 4.4 (linux version) instead of the most recent version because the extension for DTIPrep is not avaliable on the latter one. I followed the steps indicated in this tutorial to convert Dicom to Nrrd but nothing happends and I didn't even receive any error message (http://dmri.slicer.org/docs/tutorials/DW...). I also tried the convertion FSL to Nrrd but I didn't get any results either. The folder that I created to save the outputs remained empty. I'm more interested in the convertion FSL to Nrrd, once I already have the images preprocessed in the Nifti format.
I would appreciate some help to get over this first step and perform the outliers analyses.
Thanks in advance for the help
Best regards,
Ana F.
I did some preprocessing steps on my diffusion data using FSL. More specifically, eddy-current distortions were corrected using FSL's eddy and then tensor fitting was performed using FSL's dtifit. At this stage I would like to perform an outliers detection with DTIPrep before starting Glm's analysis. However, I'm having trouble with the first stage of the convertion to Nrrd. I'm using Slicer 4.4 (linux version) instead of the most recent version because the extension for DTIPrep is not avaliable on the latter one. I followed the steps indicated in this tutorial to convert Dicom to Nrrd but nothing happends and I didn't even receive any error message (http://dmri.slicer.org/docs/tutorials/DW...). I also tried the convertion FSL to Nrrd but I didn't get any results either. The folder that I created to save the outputs remained empty. I'm more interested in the convertion FSL to Nrrd, once I already have the images preprocessed in the Nifti format.
I would appreciate some help to get over this first step and perform the outliers analyses.
Thanks in advance for the help
Best regards,
Ana F.
Threaded View
Title | Author | Date |
---|---|---|
afouto | Jun 7, 2017 | |
Martin Styner | Jun 8, 2017 | |
XIAO YANG | Jan 24, 2018 | |
XIAO YANG | Jan 24, 2018 | |
Martin Styner | Jan 26, 2018 | |
Martin Styner | Jan 25, 2018 | |
afouto | Jun 9, 2017 | |