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users > Histogram normalization, and reslicing
Aug 21, 2017 07:08 PM | Elijah Rockers
Histogram normalization, and reslicing
Hello. I have an ML feature classifier for NIfTI images, but the
caveat requires the images to be the same dimensions, and it would
also be best if I could perform histogram equalization (So that all
images have similar range of intensities)
I googled everywhere for a convenient way to do histogram equalization, and landed on CMTK since I prefer command line tools. I built from source and am now able to access the CMTK man pages for the various binaries. I see the 'warp' binary has the ability to do histogram equalization in the huge list of options, but there are no examples or even a basic usage string showing how to specify input and reference images...
Would it be too much trouble to ask for an example command that would reslice an input image and match histograms based on a reference image? Is it possible to do reslicing and histogram matching in one command? That would be fantastic.
Thanks,
Eli
I googled everywhere for a convenient way to do histogram equalization, and landed on CMTK since I prefer command line tools. I built from source and am now able to access the CMTK man pages for the various binaries. I see the 'warp' binary has the ability to do histogram equalization in the huge list of options, but there are no examples or even a basic usage string showing how to specify input and reference images...
Would it be too much trouble to ask for an example command that would reslice an input image and match histograms based on a reference image? Is it possible to do reslicing and histogram matching in one command? That would be fantastic.
Thanks,
Eli
Threaded View
Title | Author | Date |
---|---|---|
Elijah Rockers | Aug 21, 2017 | |
Elijah Rockers | Aug 21, 2017 | |
Greg Jefferis | Aug 21, 2017 | |
Torsten Rohlfing | Aug 22, 2017 | |
Elijah Rockers | Sep 1, 2017 | |
Torsten Rohlfing | Sep 2, 2017 | |