Hi Greg,

I do not find any folder lib/cmtk/bin, either inside the cmtk build folder or in local folders.

Calling the CMTK script produces the following:
./cmtk: line 47: ~/scratch/cmtk-build/bin/--help: No such file or directory

The only reason I am attempting a manual build from source is because the Fiji CMTK plugin does not install properly on Linux, which is a known problem in this forum. 

Moving the official development to Github would be a lot better; the NITRC website as a whole is slow, clunky, and difficult to work with.

Joses