help
help > RE: slurm submission error
Sep 18, 2017 03:09 PM | Jake Rieke
RE: slurm submission error
Hey Alfonso,
I was able to kick-off the job in slurm by adding the MCRROOT variable, but it seems that the job fails during the slice-timing correction step. The error generated is here:
Preparing functional Slice-timing correction. Please wait...
Warning: uiwait is no longer supported when MATLAB is started with the -nodisplay or -noFigureWindows option or there is no display. For more information, see "Changes to -nodisplay and -noFigureWindows Startup Options" in the MATLAB Release Notes. To view the release note in your system browser, run web('www.mathworks.com/help/matlab/release-notes.html#br5ktrh-3', '-browser')
> In warnfiguredialog (line 21)
In uiwait (line 40)
In conn_msgbox (line 26)
In conn_setup_preproc (line 1413)
In conn_process (line 25)
In conn_jobmanager (line 666)
In conn (line 8679)
The job seems to get hung up at this point without explicitly failing. Could you please provide further guidance? Thanks in advance.
Best regards,
Jake
I was able to kick-off the job in slurm by adding the MCRROOT variable, but it seems that the job fails during the slice-timing correction step. The error generated is here:
Preparing functional Slice-timing correction. Please wait...
Warning: uiwait is no longer supported when MATLAB is started with the -nodisplay or -noFigureWindows option or there is no display. For more information, see "Changes to -nodisplay and -noFigureWindows Startup Options" in the MATLAB Release Notes. To view the release note in your system browser, run web('www.mathworks.com/help/matlab/release-notes.html#br5ktrh-3', '-browser')
> In warnfiguredialog (line 21)
In uiwait (line 40)
In conn_msgbox (line 26)
In conn_setup_preproc (line 1413)
In conn_process (line 25)
In conn_jobmanager (line 666)
In conn (line 8679)
The job seems to get hung up at this point without explicitly failing. Could you please provide further guidance? Thanks in advance.
Best regards,
Jake
Threaded View
Title | Author | Date |
---|---|---|
Jake Rieke | Sep 15, 2017 | |
Alfonso Nieto-Castanon | Sep 15, 2017 | |
Jake Rieke | Sep 18, 2017 | |
Jake Rieke | Sep 18, 2017 | |
Alfonso Nieto-Castanon | Sep 18, 2017 | |
Jake Rieke | Sep 20, 2017 | |