help > Neuro GPS tree plugin
Mar 21, 2018  08:03 PM | pedro1
Neuro GPS tree plugin
Hi,

I'm interested in using the neuro gps tree plugin which requires a soma location file. The default of null provides good tracing (attached) of segments but not the soma. I tried creating a marker file for the soma but terminal readout was:

prepare to convert vaa3d img to neurogps image.
convert vaa3d img to neurogps image.
-------------------------------------------------------
---------------------read 1 lines, 1 remained lines
soma:0.000000 512.000000 0.000000soma file has been read.
5.178325 s eclipsed in binarization.
There are 42174 dots before Erosion.
Image Binarization complete.
begin tracing.
ReconstructSomaShapeQuanRevi
Segmentation fault (core dumped)

Any advice?

Thanks!

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TitleAuthorDate
Neuro GPS tree plugin
pedro1 Mar 21, 2018
Zhi Zhou Mar 23, 2018