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help > Neuro GPS tree plugin
Mar 21, 2018 08:03 PM | pedro1
Neuro GPS tree plugin
Hi,
I'm interested in using the neuro gps tree plugin which requires a soma location file. The default of null provides good tracing (attached) of segments but not the soma. I tried creating a marker file for the soma but terminal readout was:
prepare to convert vaa3d img to neurogps image.
convert vaa3d img to neurogps image.
-------------------------------------------------------
---------------------read 1 lines, 1 remained lines
soma:0.000000 512.000000 0.000000soma file has been read.
5.178325 s eclipsed in binarization.
There are 42174 dots before Erosion.
Image Binarization complete.
begin tracing.
ReconstructSomaShapeQuanRevi
Segmentation fault (core dumped)
Any advice?
Thanks!
I'm interested in using the neuro gps tree plugin which requires a soma location file. The default of null provides good tracing (attached) of segments but not the soma. I tried creating a marker file for the soma but terminal readout was:
prepare to convert vaa3d img to neurogps image.
convert vaa3d img to neurogps image.
-------------------------------------------------------
---------------------read 1 lines, 1 remained lines
soma:0.000000 512.000000 0.000000soma file has been read.
5.178325 s eclipsed in binarization.
There are 42174 dots before Erosion.
Image Binarization complete.
begin tracing.
ReconstructSomaShapeQuanRevi
Segmentation fault (core dumped)
Any advice?
Thanks!
Threaded View
Title | Author | Date |
---|---|---|
pedro1 | Mar 21, 2018 | |
Zhi Zhou | Mar 23, 2018 | |