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Apr 30, 2018 12:04 AM | Alejandra Boronat
Can I use CMTK to register segmented/label files?
Hi,
I've been using CMTK (Linux) to register insect brain images, and most of the times I get very good results. Thus far, I have mainly use the binary registrationx.
Because it's become important for me to use segmented brain images, I would like to know if I can use as an input, segmented brain files obtained from ImageJ/segmentation editor for registration (.label.tif files converted to .nrrd). If so, how does it work? how do I tell the binary that the file contains different labels? I've tried a couple of times though, but it seems that, because of the image format, the labels are actually not being recognized.
Hope there is a way to deal with this.
Best regards,
Alejandra
I've been using CMTK (Linux) to register insect brain images, and most of the times I get very good results. Thus far, I have mainly use the binary registrationx.
Because it's become important for me to use segmented brain images, I would like to know if I can use as an input, segmented brain files obtained from ImageJ/segmentation editor for registration (.label.tif files converted to .nrrd). If so, how does it work? how do I tell the binary that the file contains different labels? I've tried a couple of times though, but it seems that, because of the image format, the labels are actually not being recognized.
Hope there is a way to deal with this.
Best regards,
Alejandra
Threaded View
Title | Author | Date |
---|---|---|
Alejandra Boronat | Apr 30, 2018 | |
Torsten Rohlfing | May 1, 2018 | |
Torsten Rohlfing | May 1, 2018 | |