help > RE: Nuisance regress via compcor
May 15, 2018  07:05 AM | Moa Peter
RE: Nuisance regress via compcor
Hi Alfonso,
I am, as Frank was, interested in the denoising aspects of the CONN toolbox, preferrably using batch scripting. Your reply to Frank has been very helpful for me, but I am still struggling with defining my gm/wm/csf ROIs in a way that makes the toolbox take them as the "Grey Matter", "White Matter" and "CSF" ROIs (which would avoid redoing the segmentation). What I have tried so far is defining the segmented data using batch.Setup.rois.files and naming the files (batch.Setup.rois.name) "Grey Matter" etc, however, this only adds them as additional ROIs and the original "Grey Matter" etc ROIs are still empty. 
I am a beginner and would really appreciate any kind of help!
Best regards
Moa
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RE: Nuisance regress via compcor
May 15, 2018