open-discussion
open-discussion > problems running on mac
May 21, 2018 11:05 PM | Scott Sorg
problems running on mac
Hello,
I've been trying to test out DTIprep on some data, but I haven't been able to get it to run successfully. I'm not sure if it is due to errors I'm making or if the data may just be unsuitable for DTIprep (my assumption is that it should be fine). One thing that I noticed is that it doesn't immediately recognize where slicer is located or fsl. I set the paths to both programs (fsl_bet2 and slicer) in the protocol path section. I am running it with the default settings. Last time I ran it (on a simple 6 direction scheme with 1 b0 image) the message: "Single b-value DWI without a b0/baseline!" appeared within the Interlace-wise Check Artifacts section. I installed slicer (4.8.1), FSL (5.0) and DTIprep (DTIPrep1.2.8_MacOSX). Any assistance here would be most appreciated.
-Scott
I've been trying to test out DTIprep on some data, but I haven't been able to get it to run successfully. I'm not sure if it is due to errors I'm making or if the data may just be unsuitable for DTIprep (my assumption is that it should be fine). One thing that I noticed is that it doesn't immediately recognize where slicer is located or fsl. I set the paths to both programs (fsl_bet2 and slicer) in the protocol path section. I am running it with the default settings. Last time I ran it (on a simple 6 direction scheme with 1 b0 image) the message: "Single b-value DWI without a b0/baseline!" appeared within the Interlace-wise Check Artifacts section. I installed slicer (4.8.1), FSL (5.0) and DTIprep (DTIPrep1.2.8_MacOSX). Any assistance here would be most appreciated.
-Scott
Threaded View
Title | Author | Date |
---|---|---|
Scott Sorg | May 21, 2018 | |
Martin Styner | May 24, 2018 | |