users > RE: Affine registration stops after generating cmd.sh
Jun 28, 2018  12:06 PM | Rob Kozol - Dept. of Biology, University of Miami
RE: Affine registration stops after generating cmd.sh
Hey Greg,

Sorry for the late reply. Here is the ls -lR from a directory with the same problem.

[r.kozol1@pegasus CMTKreg]$ ls -lR
.:
total 96
drwxrwxrwx 2 r.kozol1 ccsuser 512 Jun 16 23:35 commands
drwxr-xr-x 2 r.kozol1 ccsuser 32768 Jun 27 19:06 images
drwxr-xr-x 2 r.kozol1 ccsuser 32768 Jun 28 00:44 Jobs
drwxr-xr-x 2 r.kozol1 ccsuser 512 Jun 19 21:13 refbrain
drwxr-xr-x 2 r.kozol1 ccsuser 32768 Jun 24 01:26 reformatted
drwxr-xr-x 4 r.kozol1 ccsuser 512 May 15 15:15 Registration

./commands:
total 0
-rwxr-xr-x 1 r.kozol1 ccsuser 320 Jun 13 13:47 munger_2018-05-18_1.sh
./images:
total 424544
-rw-r--r-- 1 r.kozol1 ccsuser 216546431 Jun 27 19:19 WTBG1_01.nrrd
-rw-r--r-- 1 r.kozol1 ccsuser 218154261 Jun 27 19:15 WTBG1_02.nrrd
./Jobs:
total 512
-rw-r--r-- 1 r.kozol1 ccsuser 1331 May 27 14:12 16361889.err
-rw-r--r-- 1 r.kozol1 ccsuser 3722 May 27 14:12 16361889.out
-rw-r--r-- 1 r.kozol1 ccsuser 2150 May 27 17:58 16361964.err
-rw-r--r-- 1 r.kozol1 ccsuser 1595 May 27 17:58 16361964.out
-rw-r--r-- 1 r.kozol1 ccsuser 826 May 27 20:47 16361978.err
-rw-r--r-- 1 r.kozol1 ccsuser 2559 May 27 20:47 16361978.out
-rw-r--r-- 1 r.kozol1 ccsuser 535 May 28 00:53 16362015.err
-rw-r--r-- 1 r.kozol1 ccsuser 2692 May 28 00:53 16362015.out
-rw-r--r-- 1 r.kozol1 ccsuser 1331 May 28 09:42 16362027.err
-rw-r--r-- 1 r.kozol1 ccsuser 3720 May 28 09:42 16362027.out
-rw-r--r-- 1 r.kozol1 ccsuser 330 May 28 16:18 16362111.err
-rw-r--r-- 1 r.kozol1 ccsuser 307 May 28 16:18 16362111.out
-rw-r--r-- 1 r.kozol1 ccsuser 330 May 28 20:41 16362164.err
-rw-r--r-- 1 r.kozol1 ccsuser 204 May 28 20:41 16362164.out
-rw-r--r-- 1 r.kozol1 ccsuser 1331 May 31 14:15 16373719.err
-rw-r--r-- 1 r.kozol1 ccsuser 3874 May 31 14:15 16373719.out
-rw-r--r-- 1 r.kozol1 ccsuser 1331 Jun 2 14:03 16391328.err
-rw-r--r-- 1 r.kozol1 ccsuser 3875 Jun 2 14:03 16391328.out
-rw-r--r-- 1 r.kozol1 ccsuser 1331 Jun 2 19:36 16394102.err
-rw-r--r-- 1 r.kozol1 ccsuser 3874 Jun 2 19:36 16394102.out
-rw-r--r-- 1 r.kozol1 ccsuser 330 Jun 4 19:40 16398549.err
-rw-r--r-- 1 r.kozol1 ccsuser 323 Jun 4 19:40 16398549.out
-rw-r--r-- 1 r.kozol1 ccsuser 330 Jun 6 15:05 16409110.err
-rw-r--r-- 1 r.kozol1 ccsuser 212 Jun 6 15:05 16409110.out
-rw-r--r-- 1 r.kozol1 ccsuser 330 Jun 7 02:30 16410258.err
-rw-r--r-- 1 r.kozol1 ccsuser 212 Jun 7 02:30 16410258.out
-rw-r--r-- 1 r.kozol1 ccsuser 330 Jun 7 15:56 16412094.err
-rw-r--r-- 1 r.kozol1 ccsuser 323 Jun 7 15:56 16412094.out
-rw-r--r-- 1 r.kozol1 ccsuser 39 Jun 15 15:50 16430999.err
-rw-r--r-- 1 r.kozol1 ccsuser 335 Jun 15 15:50 16430999.out
-rw-r--r-- 1 r.kozol1 ccsuser 330 Jun 28 00:44 16632149.err
-rw-r--r-- 1 r.kozol1 ccsuser 305 Jun 28 00:44 16632149.out
-rwxr-xr-x 1 r.kozol1 ccsuser 279 Jun 13 13:47 munger_2018-05-18_1.job
./refbrain:
total 235360
-rw-r--r-- 1 r.kozol1 ccsuser 240983040 Jun 19 21:23 Ref20131120pt14pl2.nrrd
./reformatted:
total 600704
-rw-r--r-- 1 r.kozol1 ccsuser 70134669 Jun 2 14:02 Ref20131120pt14pl2_shank3abCTH201_01_warp_m0g80c8e1e-1x52r3.nrrd
-rw-r--r-- 1 r.kozol1 ccsuser 67580854 Jun 2 14:03 Ref20131120pt14pl2_shank3abCTH201_02_warp_m0g80c8e1e-1x52r3.nrrd
-rw-r--r-- 1 r.kozol1 ccsuser 79469785 Jun 2 19:35 Ref20131120pt14pl2_shank3abCTPTZ1_01_warp_m0g80c8e1e-1x52r3.nrrd
-rw-r--r-- 1 r.kozol1 ccsuser 78265315 Jun 2 19:36 Ref20131120pt14pl2_shank3abCTPTZ1_02_warp_m0g80c8e1e-1x52r3.nrrd
-rw-r--r-- 1 r.kozol1 ccsuser 60518106 May 31 14:14 Ref20131120pt14pl2_shank3abNTH201_01_warp_m0g80c8e1e-1x52r3.nrrd
-rw-r--r-- 1 r.kozol1 ccsuser 65029315 May 31 14:15 Ref20131120pt14pl2_shank3abNTH201_02_warp_m0g80c8e1e-1x52r3.nrrd
-rw-r--r-- 1 r.kozol1 ccsuser 42868805 May 27 14:12 Ref20131120pt14pl2_WTH201_01_warp_m0g80c8e1e-1x52r3.nrrd
-rw-r--r-- 1 r.kozol1 ccsuser 37691353 May 27 14:12 Ref20131120pt14pl2_WTH201_02_warp_m0g80c8e1e-1x52r3.nrrd
-rw-r--r-- 1 r.kozol1 ccsuser 58355215 May 28 09:41 Ref20131120pt14pl2_WTPTZ6_01_warp_m0g80c8e1e-1x52r3.nrrd
-rw-r--r-- 1 r.kozol1 ccsuser 55030973 May 28 09:42 Ref20131120pt14pl2_WTPTZ6_02_warp_m0g80c8e1e-1x52r3.nrrd
./Registration:
total 64
drwxr-xr-x 3 r.kozol1 ccsuser 32768 Jun 27 20:14 affine
drwxr-xr-x 2 r.kozol1 ccsuser 32768 Jun 16 13:24 warp
./Registration/affine:
total 0
drwxr-xr-x 2 r.kozol1 ccsuser 512 Jun 28 00:44 Ref20131120pt14pl2_WTBG1_01_9dof.list
./Registration/affine/Ref20131120pt14pl2_WTBG1_01_9dof.list:
total 0
-rw-r--r-- 1 r.kozol1 ccsuser 229 Jun 27 20:14 cmd.sh
./Registration/warp:
total 0

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TitleAuthorDate
Rob Kozol Jun 18, 2018
RE: Affine registration stops after generating cmd.sh
Rob Kozol Jun 28, 2018
Greg Jefferis Jun 28, 2018
Rob Kozol Jun 29, 2018
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