users > RE: Affine registration stops after generating cmd.sh
Jun 30, 2018  11:06 PM | Greg Jefferis
RE: Affine registration stops after generating cmd.sh
Hi Rob,

Is it possible that some of your images are truncated? It seems that you are saving them uncompressed (ie encoding raw) but I notice that for one of your broken files the channel 1 and 2 images are different sizes:

-rw-r--r-- 1 r.kozol1 ccsuser 216546431 Jun 27 19:19 WTBG1_01.nrrd
-rw-r--r-- 1 r.kozol1 ccsuser 218154261 Jun 27 19:15 WTBG1_02.nrrd

The difference of 1,607,830 bytes does not seem compatible with a small difference in the header. Fiji will actually read truncated images without complaining, but cmtk/the nrrd libraries will need the whole image. I suggest you share some of your images offline.

Best,

Greg.

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TitleAuthorDate
Rob Kozol Jun 18, 2018
Rob Kozol Jun 28, 2018
Greg Jefferis Jun 28, 2018
Rob Kozol Jun 29, 2018
Greg Jefferis Jun 29, 2018
Rob Kozol Jun 30, 2018
RE: Affine registration stops after generating cmd.sh
Greg Jefferis Jun 30, 2018
Rob Kozol Jun 19, 2018
Greg Jefferis Jun 19, 2018
Rob Kozol Jun 19, 2018
Greg Jefferis Jun 19, 2018
Rob Kozol Jun 21, 2018
Greg Jefferis Jun 23, 2018
Rob Kozol Jun 19, 2018
Greg Jefferis Jun 19, 2018