help > RE: Calculate framewise displacement Jenkinson
Jul 11, 2018  04:07 AM | Alfonso Nieto-Castanon - McGovern Institute for Brain Research. MIT
RE: Calculate framewise displacement Jenkinson
Dear Julian,

Please try the attached patch using the syntax:

   conn_convertl12l1covariate FD_jenkinson

That will create in your CONN project a new 'QC_FDjenkinson' covariate with the Framewise Displacement timeseries (using Jenkinson definition and FSL's defaults, instead of CONN's). See "help conn_convertl12l1covariate" for additional options (the script allows you to use different Sphere radius or center definitions in Jenkinson's FD formulation, use CONN's or Power's formulation instead, etc.) This script is still under development so please let me know if you run into any issues

Originally posted by Julian Dronse:
Dear Alfonso, dear all,

is there an easy way to compute FD Jenkinson using the first level realignment covariate for use as a 2nd level covariate in CONN?

Thank you!
Best wishes


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Julian Dronse Jul 6, 2018
RE: Calculate framewise displacement Jenkinson
Alfonso Nieto-Castanon Jul 11, 2018
Julian Dronse Jul 16, 2018