open-discussion > RE: Generating image for publication [Bioimage suite related]
Jul 11, 2018 07:07 AM | Larry Olson - Emory University
RE: Generating image for publication [Bioimage suite related]
-MRIcron is actually excellent for extracting the VOI and displaying 2D images in a single plane or as orthogonal triplane images. I have found these steps helpful if you choose MRIcron:
- First, create an intensity filter of the perfusion image from the Draw menu. This will allow you to "extract" the volume of the hyper (or hypo) perfusion clusters.
- Then mask the clusters in the perfusion image using the Draw menu. Open the image of the clusters, then open the intensity filter voi as a VOI in the Draw menu, then apply the mask and save the result.
- Finally open the masked perfusion cluster as an overlay on your T1. I favor the actc LUT/color map to show these results
|Luis Araujo||May 30, 2018|
|Larry Olson||May 30, 2018|
|Luis Araujo||Jul 11, 2018|
|Larry Olson||Jul 11, 2018|