open-discussion > RE: Generating image for publication [Bioimage suite related]
Jul 11, 2018  07:07 AM | Larry Olson - Emory University
RE: Generating image for publication [Bioimage suite related]
-MRIcron is actually excellent for extracting the VOI and displaying 2D images in a single plane or as orthogonal triplane images. I have found these steps helpful if you choose MRIcron:
  • First, create an intensity filter of the perfusion image from the Draw menu. This will allow you to "extract" the volume of the hyper (or hypo) perfusion clusters.
  • Then mask the clusters in the perfusion image using the Draw menu. Open the image of the clusters, then open the intensity filter voi as a VOI in the Draw menu, then apply the mask and save the result.
  • Finally open the masked perfusion cluster as an overlay on your T1. I favor the actc LUT/color map to show these results
-BIS representations in the ISAS analysis are really nice too

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TitleAuthorDate
Luis Araujo May 30, 2018
Larry Olson May 30, 2018
Luis Araujo Jul 11, 2018
RE: Generating image for publication [Bioimage suite related]
Larry Olson Jul 11, 2018