open-discussion > RE: Including CompCor (CONN toolbox) into SPM batch
Feb 11, 2019  05:02 AM | Sara Calzolari
RE: Including CompCor (CONN toolbox) into SPM batch
Dear Lars,

many thanks for your reply, I will then use the PhysIO toolbox.


So, if I understood correctly,  in the SPM batch module "TAPAS PhysIO toolbox" I will have to focus just on the "model" part (see image attached), as I haven't collected physiological measures and I just want to perform aCompCor...correct? Can I just edit the batch script to delete the sections "log_files","scan_timing" and "preproc"?

Also, my preprocessing pipeline includes realignment (estimation and reslicing), slice timing, coregistration (estimate), segmentation, normalisation (write), smoothing. Anything else I would need for a successful denoising?

Many thanks for your help.

Best,
Sara

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TitleAuthorDate
Sara Calzolari Jan 30, 2019
Lars Kasper Jan 31, 2019
RE: Including CompCor (CONN toolbox) into SPM batch
Sara Calzolari Feb 11, 2019
Lars Kasper Feb 12, 2019