open-discussion > RE: Including CompCor (CONN toolbox) into SPM batch
Feb 11, 2019  05:02 AM | Sara Calzolari
RE: Including CompCor (CONN toolbox) into SPM batch
Dear Lars,

many thanks for your reply, I will then use the PhysIO toolbox.


So, if I understood correctly,  in the SPM batch module "TAPAS PhysIO toolbox" I will have to focus just on the "model" part (see image attached), as I haven't collected physiological measures and I just want to perform aCompCor...correct? Can I just edit the batch script to delete the sections "log_files","scan_timing" and "preproc"?

Also, my preprocessing pipeline includes realignment (estimation and reslicing), slice timing, coregistration (estimate), segmentation, normalisation (write), smoothing. Anything else I would need for a successful denoising?

Many thanks for your help.

Best,
Sara

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TitleAuthorDate
Sara Calzolari Jan 30, 2019
Lars Kasper Jan 31, 2019
RE: Including CompCor (CONN toolbox) into SPM batch
Sara Calzolari Feb 11, 2019
Lars Kasper Feb 12, 2019
Ralf Veit Feb 28, 2019
Lars Kasper Feb 28, 2019
Ralf Veit Mar 1, 2019
Lars Kasper Mar 1, 2019
Ralf Veit Mar 1, 2019
Lars Kasper Mar 1, 2019
Ralf Veit Mar 4, 2019
Ralf Veit Mar 5, 2019
Lars Kasper Mar 5, 2019
Ralf Veit Mar 5, 2019
Lars Kasper Mar 9, 2019
Ralf Veit Mar 11, 2019