questions > dcm2niix segmenation fault with Centos 7
Apr 1, 2019  02:04 PM | Niels Focke
dcm2niix segmenation fault with Centos 7
Dear All,

I have to deal with Siemens syngo.via DTI DICOMs for a recent project and, thus, had to switch to a newer version of dcm2niix. The old version seems not to be able to extract the diffusion gradients (bvecs/bvals) from these new files.

I now experience a "segmenation fault" error in a Centos 7 enviroment when I do a conversion. The help text is displayed fine, so the programm does run, but any conversion immediately gives this crash.

I could reproduce this with the dcm2niix version available via mricrogl (2018-08-03) and the 2018-11-25 from the dcm2niix GitHub (including the LinuxCompat version). This does NOT happen with the version I was using previously (2017-05-28, also from mricrogl).

I know that Centos is a bit special with old versions used for some components. Still, I believe RHEL/SL/Centos/... 7 is not totally outdated. The "ldd"'s seem all to be there.

Any suggestions how to get this running?

Many thanks,

Niels

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TitleAuthorDate
dcm2niix segmenation fault with Centos 7
Niels Focke Apr 1, 2019
Niels Focke Apr 4, 2019
Chris Rorden Apr 1, 2019
Chris Rorden Apr 1, 2019
Rob Reid Apr 1, 2019