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questions > dcm2niix segmenation fault with Centos 7
Apr 1, 2019 02:04 PM | Niels Focke
dcm2niix segmenation fault with Centos 7
Dear All,
I have to deal with Siemens syngo.via DTI DICOMs for a recent project and, thus, had to switch to a newer version of dcm2niix. The old version seems not to be able to extract the diffusion gradients (bvecs/bvals) from these new files.
I now experience a "segmenation fault" error in a Centos 7 enviroment when I do a conversion. The help text is displayed fine, so the programm does run, but any conversion immediately gives this crash.
I could reproduce this with the dcm2niix version available via mricrogl (2018-08-03) and the 2018-11-25 from the dcm2niix GitHub (including the LinuxCompat version). This does NOT happen with the version I was using previously (2017-05-28, also from mricrogl).
I know that Centos is a bit special with old versions used for some components. Still, I believe RHEL/SL/Centos/... 7 is not totally outdated. The "ldd"'s seem all to be there.
Any suggestions how to get this running?
Many thanks,
Niels
I have to deal with Siemens syngo.via DTI DICOMs for a recent project and, thus, had to switch to a newer version of dcm2niix. The old version seems not to be able to extract the diffusion gradients (bvecs/bvals) from these new files.
I now experience a "segmenation fault" error in a Centos 7 enviroment when I do a conversion. The help text is displayed fine, so the programm does run, but any conversion immediately gives this crash.
I could reproduce this with the dcm2niix version available via mricrogl (2018-08-03) and the 2018-11-25 from the dcm2niix GitHub (including the LinuxCompat version). This does NOT happen with the version I was using previously (2017-05-28, also from mricrogl).
I know that Centos is a bit special with old versions used for some components. Still, I believe RHEL/SL/Centos/... 7 is not totally outdated. The "ldd"'s seem all to be there.
Any suggestions how to get this running?
Many thanks,
Niels
Threaded View
Title | Author | Date |
---|---|---|
Niels Focke | Apr 1, 2019 | |
Niels Focke | Apr 4, 2019 | |
Chris Rorden | Apr 1, 2019 | |
Chris Rorden | Apr 1, 2019 | |
Rob Reid | Apr 1, 2019 | |