users > RE: No reformatted files produced from Fiji/CMTK registration
Jun 28, 2019  12:06 PM | Zane Aldworth
RE: No reformatted files produced from Fiji/CMTK registration
Hmmm.  That doesn't seem to change the output, assuming I correctly understand the input format.  In my case I have only a single channel, with one reference brain and (at least initially) a single floating brain that I wish to register, so my input is currently:
filestem_01.nrrd (the reference brain)
otherfilestem_01.nrrd (the brain to be registered)

I've selected only to reformat channel 01, run the command, and still only get the Registration directory as an output.  Should I expect a Reformat directory, as in the classic gui?  Or are the reformatted/registered brains saved in some other manner?

Also, are there equivalent commands to e.g. "--class-ref label", "dof2mat", or "reformatx" in the gui, or is that functionality not supported here?

Thanks!

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TitleAuthorDate
Zane Aldworth Jun 28, 2019
Greg Jefferis Jun 28, 2019
RE: No reformatted files produced from Fiji/CMTK registration
Zane Aldworth Jun 28, 2019
Greg Jefferis Jun 29, 2019
Zane Aldworth Jun 29, 2019
Greg Jefferis Jun 30, 2019