users > RE: No reformatted files produced from Fiji/CMTK registration
Jun 30, 2019  04:06 AM | Greg Jefferis
RE: No reformatted files produced from Fiji/CMTK registration
Dear Zane,

In the files that you sent me, only affine registration was selected. munger (the script that coordinates registrations) has been built assuming that you want to do a full warping registration. By default it only reformats after the warping registration is complete. If you want to reformat after the affine step, then you need to request this explicitly. 


-l [p|a|0..9|f] run reformat on these levels
(default f=final warp, p=principal axis, a=affine, 0..9=warp intermediates)

So in this case adding the extra parameter to munger -l a should do the trick.

I will check your files with a warping registration to see if that continues to be a problem there.

Best,

Greg.

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TitleAuthorDate
Zane Aldworth Jun 28, 2019
Greg Jefferis Jun 28, 2019
Zane Aldworth Jun 28, 2019
Greg Jefferis Jun 29, 2019
Zane Aldworth Jun 29, 2019
RE: No reformatted files produced from Fiji/CMTK registration
Greg Jefferis Jun 30, 2019