questions
questions > RE: fail to obtain slice timing information with data from a GE scanner
Jul 18, 2019 10:07 AM | Chris Rorden
RE: fail to obtain slice timing information with data from a GE scanner
I believe this reflects a limitation of your DICOM images, and not
a problem with dcm2niix. For GE equipment, we rely on the
tags RTIA Timer (0021,105E) or Trigger Time (DICOM
0018,1060). Be aware that not all GE sequences populate these tags.
Therefore, I believe that your raw data does not encode slice
timing. You can verify this by examining the DICOM header. I would
recommend dcmdump or gdcmdump to look at your header. However, you
can also have dcm2niix report the DICOM header by including the
logorrheic verbosity "-v 2". Since this mode generates so much
output, you may want to isolate a single image from the series for
this command. I suspect if you do this, you will find that your
files do not contain either of these two timing tags. Your GE
research collaboration manager can help you select EPI sequences
that generate these tags.
Threaded View
Title | Author | Date |
---|---|---|
Yaqiong Xiao | Jul 17, 2019 | |
Chris Rorden | Jul 19, 2019 | |
Chris Rorden | Jul 18, 2019 | |
Chris Rorden | Jul 18, 2019 | |
Yaqiong Xiao | Jul 18, 2019 | |
Chris Rorden | Jul 18, 2019 | |
Yaqiong Xiao | Jul 18, 2019 | |