help > RE: QCistern missing occipital regions when using T1 + Brainmask
Oct 18, 2019 11:10 AM | cccoleman
RE: QCistern missing occipital regions when using T1 + Brainmask
So it looks to me like the region drops out between MID002 and MID003.
That step calls:
ImageMath -conComp 1
ImageMath describes that command thusly:
-conComp n For a binary image, rank all the connected components according to their sizes and create a binary image with the 'n' biggest ones
Alternatively, maybe an earlier step is deleting too much csf such that the csf layer is no longer a single connected component. ?
|cccoleman||Oct 14, 2019|
|Martin Styner||Oct 15, 2019|
|cccoleman||Oct 18, 2019|
|Martin Styner||Oct 28, 2019|