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help > RE: QCistern missing occipital regions when using T1 + Brainmask
Oct 18, 2019 06:10 PM | cccoleman
RE: QCistern missing occipital regions when using T1 + Brainmask
So it looks to me like the region drops out between MID002 and MID003.
That step calls:
ImageMath -conComp
1
ImageMath describes that command thusly:
-conComp n For a binary image, rank all the
connected components according to their sizes and create a binary
image with the 'n' biggest ones
Alternatively, maybe an earlier step is deleting too much csf such that the csf layer is no longer a single connected component. ?
Threaded View
| Title | Author | Date |
|---|---|---|
| cccoleman | Oct 14, 2019 | |
| Martin Styner | Oct 15, 2019 | |
| cccoleman | Oct 18, 2019 | |
| Martin Styner | Oct 28, 2019 | |