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**RE: Problem with preprocessing**Dec 5, 2019 01:12 PM | Hongru Zhu

RE: Problem with preprocessing

Hi Anton,

I have the same problem. My Os is Windows 10 64. Are there any solutions?

Thanks

Hongru

Home dir C:\Users\zhuho\sdm.conf

Loading study mask gray_matter_2mm

Executing Perm for MyTest with vars ,,, and hyp[1.000000,0.000000,0.000000,0.000000,0.000000]

9 studies included

Using 8 threads

aRecreating studies

file D:\Downloads\SdmPsiGui-win64-v6.12\SdmPsiGui-win64-v6.12rc1\bin\windows64\..\..\/share/indexes_gray_matter_2mm.bin

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oRecreating studies

aLoading imputations

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oLoading imputations

aGetting Null distributions with 8 threads

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oGetting Null distributions

Path to save analysis_MyTest/fwe/maxsMinsZ.asc

aPerforming P-correction

oPerforming P-correction

Saving study mask gray_matter_2mm

m_mask gray_matter_2mm

Done!

IMGCALC IMAGE UTILITY (part of the SDM Tools).

http://www.sdmproject.com/sdmtools/imgca...

Syntaxis:

imgcalc [input file] [arguments]

Arguments:

[nothing] # [useful to save as *.nii.gz]

-abs [output file] # y = abs(x)

-acos [output file] # y = acos(x)

-add [input file or number] [output file] # y = x1 + x2

-asin [output file] # y = asin(x)

-atan [output file] # y = atan(x)

-atlas [output file] # [returns blob and atlas info]

-bin [output file] # y = x ? 1 : 0

-blobs [output file] # [returns blob information]

-compl [output file] # y = 1 - x

-cos [output file] # y = cos(x)

-div [input file or number] [output file] # y = x1 / x2

-ethr [number] [output file] # [cluster extent threshold]

-exp [output file] # y = exp(x)

-log [output file] # y = log(x)

-logp2p [output file] # y = 1 - 10^-x

-logp2t [df] [output file] # y = qt(1 - 10^-x, df)

-logp2z [output file] # y = qz(1 - 10^-x)

-mas [input file] [output file] # y = x2 > 0 ? x1 : 0

-max [input file or number] [output file] # y = max(x1, x2)

-min [input file or number] [output file] # y = min(x1, x2)

-mthr [number] [output file] # [cluster mass threshold]

-mul [input file or number] [output file] # y = x1 * x2

-p2logp [output file] # y = -log10(1 - x)

-p2t [df] [output file] # y = qt(x, df)

-p2z [output file] # y = qz(x)

-pow [input file or number] [output file] # y = x1 ^ x2

-pthr [number] [output file] # [cluster peak threshold]

-recip [output file] # y = 1 / x

-rem [input file or number] [output file] # y = x1 % x2

-s [sigma] [output file] # [Gaussian smoothing]

-sdm # [similar to -atlas but for SDM]

-sdmreg [output file] # [linear reg. to SDM template]

-set_logp # [sets values as -log10(p)]

-set_mni # [sets space as MNI]

-set_p # [sets values as 1-p]

-set_t [df] # [sets values as t(df)]

-set_tal # [sets space as Talairach]

-set_z # [sets values as z]

-sin [output file] # y = sin(x)

-sqr [output file] # y = x^2

-sqrt [output file] # y = sqrt(x)

-sub [input file or number] [output file] # y = x1 - x2

-t2logp [output file] # y = -log10(1 - pt(x, df))

-t2p [output file] # y = pt(x, df)

-t2z [output file] # y = qz(pt(x, df))

-tan [output file] # y = tan(x)

-thr [number] [output file] # y = x1 >= x2 ? x1 : 0

-uthr [number] [output file] # y = x1 <= x2 ? x1 : 0

-z2logp [output file] # y = -log10(1 - pz(x))

-z2p [output file] # y = pz(x)

-z2t [df] [output file] # y = qt(pz(x), df)

a(imgcalc) [foobin] = [foothr] ? 1 : 0

WARNING: File 'foothr' was not found or is not a NIfTI file (unknown extension).

The program will close as this problem could cause fatal errors.

a(imgcalc) [Drive/Onedrive/Documents/paper/meta/pediatric_OCD/OCD/analysis_MyTest/MyTest_z] = [foobin] * [D:/Google]

WARNING: File 'foobin' was not found or is not a NIfTI file (unknown extension).

The program will close as this problem could cause fatal errors.

a(imgcalc) [D:/Google] = clusters from [foomul] with size >= 10

WARNING: File 'foomul' was not found or is not a NIfTI file (unknown extension).

The program will close as this problem could cause fatal errors.

IMGCALC IMAGE UTILITY (part of the SDM Tools).

http://www.sdmproject.com/sdmtools/imgca...

Syntaxis:

imgcalc [input file] [arguments]

Arguments:

[nothing] # [useful to save as *.nii.gz]

-abs [output file] # y = abs(x)

-acos [output file] # y = acos(x)

-add [input file or number] [output file] # y = x1 + x2

-asin [output file] # y = asin(x)

-atan [output file] # y = atan(x)

-atlas [output file] # [returns blob and atlas info]

-bin [output file] # y = x ? 1 : 0

-blobs [output file] # [returns blob information]

-compl [output file] # y = 1 - x

-cos [output file] # y = cos(x)

-div [input file or number] [output file] # y = x1 / x2

-ethr [number] [output file] # [cluster extent threshold]

-exp [output file] # y = exp(x)

-log [output file] # y = log(x)

-logp2p [output file] # y = 1 - 10^-x

-logp2t [df] [output file] # y = qt(1 - 10^-x, df)

-logp2z [output file] # y = qz(1 - 10^-x)

-mas [input file] [output file] # y = x2 > 0 ? x1 : 0

-max [input file or number] [output file] # y = max(x1, x2)

-min [input file or number] [output file] # y = min(x1, x2)

-mthr [number] [output file] # [cluster mass threshold]

-mul [input file or number] [output file] # y = x1 * x2

-p2logp [output file] # y = -log10(1 - x)

-p2t [df] [output file] # y = qt(x, df)

-p2z [output file] # y = qz(x)

-pow [input file or number] [output file] # y = x1 ^ x2

-pthr [number] [output file] # [cluster peak threshold]

-recip [output file] # y = 1 / x

-rem [input file or number] [output file] # y = x1 % x2

-s [sigma] [output file] # [Gaussian smoothing]

-sdm # [similar to -atlas but for SDM]

-sdmreg [output file] # [linear reg. to SDM template]

-set_logp # [sets values as -log10(p)]

-set_mni # [sets space as MNI]

-set_p # [sets values as 1-p]

-set_t [df] # [sets values as t(df)]

-set_tal # [sets space as Talairach]

-set_z # [sets values as z]

-sin [output file] # y = sin(x)

-sqr [output file] # y = x^2

-sqrt [output file] # y = sqrt(x)

-sub [input file or number] [output file] # y = x1 - x2

-t2logp [output file] # y = -log10(1 - pt(x, df))

-t2p [output file] # y = pt(x, df)

-t2z [output file] # y = qz(pt(x, df))

-tan [output file] # y = tan(x)

-thr [number] [output file] # y = x1 >= x2 ? x1 : 0

-uthr [number] [output file] # y = x1 <= x2 ? x1 : 0

-z2logp [output file] # y = -log10(1 - pz(x))

-z2p [output file] # y = pz(x)

-z2t [df] [output file] # y = qt(pz(x), df)

a(imgcalc) [foobin] = [foothr] ? 1 : 0

WARNING: File 'foothr' was not found or is not a NIfTI file (unknown extension).

The program will close as this problem could cause fatal errors.

a(imgcalc) [Drive/Onedrive/Documents/paper/meta/pediatric_OCD/OCD/analysis_MyTest/MyTest_z] = [foobin] * [D:/Google]

WARNING: File 'foobin' was not found or is not a NIfTI file (unknown extension).

The program will close as this problem could cause fatal errors.

a(imgcalc) [foomul2] = [foomul] * -1

WARNING: File 'foomul' was not found or is not a NIfTI file (unknown extension).

The program will close as this problem could cause fatal errors.

a(imgcalc) [D:/Google] = clusters from [foomul2] with size >= 10

WARNING: File 'foomul2' was not found or is not a NIfTI file (unknown extension).

The program will close as this problem could cause fatal errors.

IMGCALC IMAGE UTILITY (part of the SDM Tools).

http://www.sdmproject.com/sdmtools/imgca...

Syntaxis:

imgcalc [input file] [arguments]

Arguments:

[nothing] # [useful to save as *.nii.gz]

-abs [output file] # y = abs(x)

-acos [output file] # y = acos(x)

-add [input file or number] [output file] # y = x1 + x2

-asin [output file] # y = asin(x)

-atan [output file] # y = atan(x)

-atlas [output file] # [returns blob and atlas info]

-bin [output file] # y = x ? 1 : 0

-blobs [output file] # [returns blob information]

-compl [output file] # y = 1 - x

-cos [output file] # y = cos(x)

-div [input file or number] [output file] # y = x1 / x2

-ethr [number] [output file] # [cluster extent threshold]

-exp [output file] # y = exp(x)

-log [output file] # y = log(x)

-logp2p [output file] # y = 1 - 10^-x

-logp2t [df] [output file] # y = qt(1 - 10^-x, df)

-logp2z [output file] # y = qz(1 - 10^-x)

-mas [input file] [output file] # y = x2 > 0 ? x1 : 0

-max [input file or number] [output file] # y = max(x1, x2)

-min [input file or number] [output file] # y = min(x1, x2)

-mthr [number] [output file] # [cluster mass threshold]

-mul [input file or number] [output file] # y = x1 * x2

-p2logp [output file] # y = -log10(1 - x)

-p2t [df] [output file] # y = qt(x, df)

-p2z [output file] # y = qz(x)

-pow [input file or number] [output file] # y = x1 ^ x2

-pthr [number] [output file] # [cluster peak threshold]

-recip [output file] # y = 1 / x

-rem [input file or number] [output file] # y = x1 % x2

-s [sigma] [output file] # [Gaussian smoothing]

-sdm # [similar to -atlas but for SDM]

-sdmreg [output file] # [linear reg. to SDM template]

-set_logp # [sets values as -log10(p)]

-set_mni # [sets space as MNI]

-set_p # [sets values as 1-p]

-set_t [df] # [sets values as t(df)]

-set_tal # [sets space as Talairach]

-set_z # [sets values as z]

-sin [output file] # y = sin(x)

-sqr [output file] # y = x^2

-sqrt [output file] # y = sqrt(x)

-sub [input file or number] [output file] # y = x1 - x2

-t2logp [output file] # y = -log10(1 - pt(x, df))

-t2p [output file] # y = pt(x, df)

-t2z [output file] # y = qz(pt(x, df))

-tan [output file] # y = tan(x)

-thr [number] [output file] # y = x1 >= x2 ? x1 : 0

-uthr [number] [output file] # y = x1 <= x2 ? x1 : 0

-z2logp [output file] # y = -log10(1 - pz(x))

-z2p [output file] # y = pz(x)

-z2t [df] [output file] # y = qt(pz(x), df)

Home dir C:\Users\zhuho\sdm.conf

aPerforming imgcalc calls

oPerforming imgcalc calls

aCalling web browser to display the report

Prior open browser

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o

aCalling MRICron to display 3D results

Mricron call: "C:/Users/zhuho/Documents/win/mricron/mricron.exe" D:\Downloads\SdmPsiGui-win64-v6.12\SdmPsiGui-win64-v6.12rc1\bin\windows64\..\..\/share/sdm_template.nii.gz -o D:/Google Drive/Onedrive/Documents/paper/meta/pediatric_OCD/OCD/analysis_MyTest/MyTest_z_p_0.05000_10.nii.gz -o D:/Google Drive/Onedrive/Documents/paper/meta/pediatric_OCD/OCD/analysis_MyTest/MyTest_z_p_0.05000_10_neg.nii.gz

o

d

getprogdir entry argv D:\Downloads\SdmPsiGui-win64-v6.12\SdmPsiGui-win64-v6.12rc1\bin\windows64/sdm_core

getprogdir exit pdir D:\Downloads\SdmPsiGui-win64-v6.12\SdmPsiGui-win64-v6.12rc1

Home dir C:\Users\zhuho\sdm.conf

aConducting globals analysis

o

aCalling web browser to display the report

Prior open browser

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d

Home dir C:\Users\zhuho\sdm.conf

Home dir C:\Users\zhuho\sdm.conf

Home dir C:\Users\zhuho\sdm.conf

Load atlas D:\Downloads\SdmPsiGui-win64-v6.12\SdmPsiGui-win64-v6.12rc1\bin\windows64\..\..\/share/atlas_aal_cts_2mm.nii.gz

length 902629 sdm1_lengt 902629

aAnalyzing coordinates

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aCreating anisotropic space

sdm_s_dir got D:\Downloads\SdmPsiGui-win64-v6.12\SdmPsiGui-win64-v6.12rc1\bin\windows64\..\..\

Path for cor template D:\Downloads\SdmPsiGui-win64-v6.12\SdmPsiGui-win64-v6.12rc1\bin\windows64\..\..\/share/cor_gray_matter_2mm.nii.gz

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aPreprocessing studies

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%72% Estimated remaining time(s): 31 (ETA 2019-12-05 11:41:36)

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Saving study mask gray_matter_2mm

m_mask gray_matter_2mm

o

aCalling web browser to display the report

Prior open browser

After open browser

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d

getprogdir entry argv D:\Downloads\SdmPsiGui-win64-v6.12\SdmPsiGui-win64-v6.12rc1\bin\windows64/sdm_core

getprogdir exit pdir D:\Downloads\SdmPsiGui-win64-v6.12\SdmPsiGui-win64-v6.12rc1

Home dir C:\Users\zhuho\sdm.conf

aConducting globals analysis

o

aCalling web browser to display the report

Prior open browser

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d

Home dir C:\Users\zhuho\sdm.conf

Home dir C:\Users\zhuho\sdm.conf

Home dir C:\Users\zhuho\sdm.conf

Load atlas D:\Downloads\SdmPsiGui-win64-v6.12\SdmPsiGui-win64-v6.12rc1\bin\windows64\..\..\/share/atlas_aal_cts_2mm.nii.gz

length 902629 sdm1_lengt 902629

aAnalyzing coordinates

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aCreating anisotropic space

sdm_s_dir got D:\Downloads\SdmPsiGui-win64-v6.12\SdmPsiGui-win64-v6.12rc1\bin\windows64\..\..\

Path for cor template D:\Downloads\SdmPsiGui-win64-v6.12\SdmPsiGui-win64-v6.12rc1\bin\windows64\..\..\/share/cor_gray_matter_2mm.nii.gz

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aPreprocessing studies

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Saving study mask gray_matter_2mm

m_mask gray_matter_2mm

o

aCalling web browser to display the report

Prior open browser

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d

Home dir C:\Users\zhuho\sdm.conf

iExecuting mle for 'OCDTest' with var1 '' var2 '' var3 '' var4 '' hyp=[1.000000,0.000000,0.000000,0.000000,0.000000] and filter ''

Loading study mask gray_matter_2mm

aStarting MLE...

Using 8 threads

ncoef: 1

aEstimating coefficients...

nLoo: 1

%9% Estimated remaining time(s): 20 (ETA 2019-12-05 11:54:03)

%18% Estimated remaining time(s): 18 (ETA 2019-12-05 11:54:03)

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oEstimating coefficients...

aEstimating tau2...

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%85% Estimated remaining time(s): 3 (ETA 2019-12-05 11:54:23)

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%88% Estimated remaining time(s): 2 (ETA 2019-12-05 11:54:22)

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%100% Estimated remaining time(s): 0 (ETA 2019-12-05 11:54:21)

%101% Estimated remaining time(s): -1 (ETA 2019-12-05 11:54:21)

oEstimating tau2...

Saving study mask gray_matter_2mm

m_mask gray_matter_2mm

incl is 10

dMLE

Loading study mask gray_matter_2mm

iExecuting MI for s_name OCDTest with 50 imputs and filter ''

aStarting MI... with nImputs 50

10 studies included in MI

%1% Estimated remaining time(s): 0 (ETA 2019-12-05 11:54:24)

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%17% Estimated remaining time(s): 581 (ETA 2019-12-05 12:06:04)

%18% Estimated remaining time(s): 660 (ETA 2019-12-05 12:07:49)

%19% Estimated remaining time(s): 690 (ETA 2019-12-05 12:08:36)

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%21% Estimated remaining time(s): 616 (ETA 2019-12-05 12:07:24)

%22% Estimated remaining time(s): 581 (ETA 2019-12-05 12:06:49)

%23% Estimated remaining time(s): 549 (ETA 2019-12-05 12:06:17)

%24% Estimated remaining time(s): 519 (ETA 2019-12-05 12:05:47)

%25% Estimated remaining time(s): 492 (ETA 2019-12-05 12:05:20)

%26% Estimated remaining time(s): 489 (ETA 2019-12-05 12:05:25)

%27% Estimated remaining time(s): 548 (ETA 2019-12-05 12:06:55)

%28% Estimated remaining time(s): 586 (ETA 2019-12-05 12:07:58)

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%30% Estimated remaining time(s): 576 (ETA 2019-12-05 12:08:07)

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%85% Estimated remaining time(s): 115 (ETA 2019-12-05 12:07:14)

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%89% Estimated remaining time(s): 90 (ETA 2019-12-05 12:08:09)

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Saving study mask gray_matter_2mm

m_mask gray_matter_2mm

dMI

Loading study mask gray_matter_2mm

iRunning meta for OCDTest with var1 '' var2 '' var3 '' var4''

10 studies included in meta

aMeta

%2% Estimated remaining time(s): 0 (ETA 2019-12-05 12:08:04)

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%24% Estimated remaining time(s): 19 (ETA 2019-12-05 12:08:29)

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Saving study mask gray_matter_2mm

m_mask gray_matter_2mm

dMeta

Loading study mask gray_matter_2mm

aPool

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a(imgcalc) [analysis_OCDTest/uncorrp.nii.gz] = "1-p values" from "z scores" in [analysis_OCDTest/OCDTest_z.nii.gz]

o

a(imgcalc) [analysis_OCDTest/uncorrp_neg.nii.gz] = 1 - [analysis_OCDTest/uncorrp.nii.gz]

o

Saving study mask gray_matter_2mm

m_mask gray_matter_2mm

dPool

Home dir C:\Users\zhuho\sdm.conf

Loading study mask gray_matter_2mm

Executing Perm for OCDTest with vars ,,, and hyp[1.000000,0.000000,0.000000,0.000000,0.000000]

10 studies included

Using 9 threads

aRecreating studies

file D:\Downloads\SdmPsiGui-win64-v6.12\SdmPsiGui-win64-v6.12rc1\bin\windows64\..\..\/share/indexes_gray_matter_2mm.bin

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oRecreating studies

aLoading imputations

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oLoading imputations

aGetting Null distributions with 9 threads

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%98% Estimated remaining time(s): 104 (ETA 2019-12-05 13:37:32)

%99% Estimated remaining time(s): 52 (ETA 2019-12-05 13:37:32)

oGetting Null distributions

Path to save analysis_OCDTest/fwe/maxsMinsZ.asc

aPerforming P-correction

oPerforming P-correction

Saving study mask gray_matter_2mm

m_mask gray_matter_2mm

Done!

IMGCALC IMAGE UTILITY (part of the SDM Tools).

http://www.sdmproject.com/sdmtools/imgca...

Syntaxis:

imgcalc [input file] [arguments]

Arguments:

[nothing] # [useful to save as *.nii.gz]

-abs [output file] # y = abs(x)

-acos [output file] # y = acos(x)

-add [input file or number] [output file] # y = x1 + x2

-asin [output file] # y = asin(x)

-atan [output file] # y = atan(x)

-atlas [output file] # [returns blob and atlas info]

-bin [output file] # y = x ? 1 : 0

-blobs [output file] # [returns blob information]

-compl [output file] # y = 1 - x

-cos [output file] # y = cos(x)

-div [input file or number] [output file] # y = x1 / x2

-ethr [number] [output file] # [cluster extent threshold]

-exp [output file] # y = exp(x)

-log [output file] # y = log(x)

-logp2p [output file] # y = 1 - 10^-x

-logp2t [df] [output file] # y = qt(1 - 10^-x, df)

-logp2z [output file] # y = qz(1 - 10^-x)

-mas [input file] [output file] # y = x2 > 0 ? x1 : 0

-max [input file or number] [output file] # y = max(x1, x2)

-min [input file or number] [output file] # y = min(x1, x2)

-mthr [number] [output file] # [cluster mass threshold]

-mul [input file or number] [output file] # y = x1 * x2

-p2logp [output file] # y = -log10(1 - x)

-p2t [df] [output file] # y = qt(x, df)

-p2z [output file] # y = qz(x)

-pow [input file or number] [output file] # y = x1 ^ x2

-pthr [number] [output file] # [cluster peak threshold]

-recip [output file] # y = 1 / x

-rem [input file or number] [output file] # y = x1 % x2

-s [sigma] [output file] # [Gaussian smoothing]

-sdm # [similar to -atlas but for SDM]

-sdmreg [output file] # [linear reg. to SDM template]

-set_logp # [sets values as -log10(p)]

-set_mni # [sets space as MNI]

-set_p # [sets values as 1-p]

-set_t [df] # [sets values as t(df)]

-set_tal # [sets space as Talairach]

-set_z # [sets values as z]

-sin [output file] # y = sin(x)

-sqr [output file] # y = x^2

-sqrt [output file] # y = sqrt(x)

-sub [input file or number] [output file] # y = x1 - x2

-t2logp [output file] # y = -log10(1 - pt(x, df))

-t2p [output file] # y = pt(x, df)

-t2z [output file] # y = qz(pt(x, df))

-tan [output file] # y = tan(x)

-thr [number] [output file] # y = x1 >= x2 ? x1 : 0

-uthr [number] [output file] # y = x1 <= x2 ? x1 : 0

-z2logp [output file] # y = -log10(1 - pz(x))

-z2p [output file] # y = pz(x)

-z2t [df] [output file] # y = qt(pz(x), df)

a(imgcalc) [foobin] = [foothr] ? 1 : 0

WARNING: File 'foothr' was not found or is not a NIfTI file (unknown extension).

The program will close as this problem could cause fatal errors.

a(imgcalc) [Drive/Onedrive/Documents/paper/meta/pediatric_OCD/OCD/analysis_OCDTest/OCDTest_z] = [foobin] * [D:/Google]

WARNING: File 'foobin' was not found or is not a NIfTI file (unknown extension).

The program will close as this problem could cause fatal errors.

a(imgcalc) [D:/Google] = clusters from [foomul] with size >= 10

WARNING: File 'foomul' was not found or is not a NIfTI file (unknown extension).

The program will close as this problem could cause fatal errors.

IMGCALC IMAGE UTILITY (part of the SDM Tools).

http://www.sdmproject.com/sdmtools/imgca...

Syntaxis:

imgcalc [input file] [arguments]

Arguments:

[nothing] # [useful to save as *.nii.gz]

-abs [output file] # y = abs(x)

-acos [output file] # y = acos(x)

-add [input file or number] [output file] # y = x1 + x2

-asin [output file] # y = asin(x)

-atan [output file] # y = atan(x)

-atlas [output file] # [returns blob and atlas info]

-bin [output file] # y = x ? 1 : 0

-blobs [output file] # [returns blob information]

-compl [output file] # y = 1 - x

-cos [output file] # y = cos(x)

-div [input file or number] [output file] # y = x1 / x2

-ethr [number] [output file] # [cluster extent threshold]

-exp [output file] # y = exp(x)

-log [output file] # y = log(x)

-logp2p [output file] # y = 1 - 10^-x

-logp2t [df] [output file] # y = qt(1 - 10^-x, df)

-logp2z [output file] # y = qz(1 - 10^-x)

-mas [input file] [output file] # y = x2 > 0 ? x1 : 0

-max [input file or number] [output file] # y = max(x1, x2)

-min [input file or number] [output file] # y = min(x1, x2)

-mthr [number] [output file] # [cluster mass threshold]

-mul [input file or number] [output file] # y = x1 * x2

-p2logp [output file] # y = -log10(1 - x)

-p2t [df] [output file] # y = qt(x, df)

-p2z [output file] # y = qz(x)

-pow [input file or number] [output file] # y = x1 ^ x2

-pthr [number] [output file] # [cluster peak threshold]

-recip [output file] # y = 1 / x

-rem [input file or number] [output file] # y = x1 % x2

-s [sigma] [output file] # [Gaussian smoothing]

-sdm # [similar to -atlas but for SDM]

-sdmreg [output file] # [linear reg. to SDM template]

-set_logp # [sets values as -log10(p)]

-set_mni # [sets space as MNI]

-set_p # [sets values as 1-p]

-set_t [df] # [sets values as t(df)]

-set_tal # [sets space as Talairach]

-set_z # [sets values as z]

-sin [output file] # y = sin(x)

-sqr [output file] # y = x^2

-sqrt [output file] # y = sqrt(x)

-sub [input file or number] [output file] # y = x1 - x2

-t2logp [output file] # y = -log10(1 - pt(x, df))

-t2p [output file] # y = pt(x, df)

-t2z [output file] # y = qz(pt(x, df))

-tan [output file] # y = tan(x)

-thr [number] [output file] # y = x1 >= x2 ? x1 : 0

-uthr [number] [output file] # y = x1 <= x2 ? x1 : 0

-z2logp [output file] # y = -log10(1 - pz(x))

-z2p [output file] # y = pz(x)

-z2t [df] [output file] # y = qt(pz(x), df)

a(imgcalc) [foobin] = [foothr] ? 1 : 0

WARNING: File 'foothr' was not found or is not a NIfTI file (unknown extension).

The program will close as this problem could cause fatal errors.

a(imgcalc) [Drive/Onedrive/Documents/paper/meta/pediatric_OCD/OCD/analysis_OCDTest/OCDTest_z] = [foobin] * [D:/Google]

WARNING: File 'foobin' was not found or is not a NIfTI file (unknown extension).

The program will close as this problem could cause fatal errors.

a(imgcalc) [foomul2] = [foomul] * -1

WARNING: File 'foomul' was not found or is not a NIfTI file (unknown extension).

The program will close as this problem could cause fatal errors.

a(imgcalc) [D:/Google] = clusters from [foomul2] with size >= 10

WARNING: File 'foomul2' was not found or is not a NIfTI file (unknown extension).

The program will close as this problem could cause fatal errors.

IMGCALC IMAGE UTILITY (part of the SDM Tools).

http://www.sdmproject.com/sdmtools/imgca...

Syntaxis:

imgcalc [input file] [arguments]

Arguments:

[nothing] # [useful to save as *.nii.gz]

-abs [output file] # y = abs(x)

-acos [output file] # y = acos(x)

-add [input file or number] [output file] # y = x1 + x2

-asin [output file] # y = asin(x)

-atan [output file] # y = atan(x)

-atlas [output file] # [returns blob and atlas info]

-bin [output file] # y = x ? 1 : 0

-blobs [output file] # [returns blob information]

-compl [output file] # y = 1 - x

-cos [output file] # y = cos(x)

-div [input file or number] [output file] # y = x1 / x2

-ethr [number] [output file] # [cluster extent threshold]

-exp [output file] # y = exp(x)

-log [output file] # y = log(x)

-logp2p [output file] # y = 1 - 10^-x

-logp2t [df] [output file] # y = qt(1 - 10^-x, df)

-logp2z [output file] # y = qz(1 - 10^-x)

-mas [input file] [output file] # y = x2 > 0 ? x1 : 0

-max [input file or number] [output file] # y = max(x1, x2)

-min [input file or number] [output file] # y = min(x1, x2)

-mthr [number] [output file] # [cluster mass threshold]

-mul [input file or number] [output file] # y = x1 * x2

-p2logp [output file] # y = -log10(1 - x)

-p2t [df] [output file] # y = qt(x, df)

-p2z [output file] # y = qz(x)

-pow [input file or number] [output file] # y = x1 ^ x2

-pthr [number] [output file] # [cluster peak threshold]

-recip [output file] # y = 1 / x

-rem [input file or number] [output file] # y = x1 % x2

-s [sigma] [output file] # [Gaussian smoothing]

-sdm # [similar to -atlas but for SDM]

-sdmreg [output file] # [linear reg. to SDM template]

-set_logp # [sets values as -log10(p)]

-set_mni # [sets space as MNI]

-set_p # [sets values as 1-p]

-set_t [df] # [sets values as t(df)]

-set_tal # [sets space as Talairach]

-set_z # [sets values as z]

-sin [output file] # y = sin(x)

-sqr [output file] # y = x^2

-sqrt [output file] # y = sqrt(x)

-sub [input file or number] [output file] # y = x1 - x2

-t2logp [output file] # y = -log10(1 - pt(x, df))

-t2p [output file] # y = pt(x, df)

-t2z [output file] # y = qz(pt(x, df))

-tan [output file] # y = tan(x)

-thr [number] [output file] # y = x1 >= x2 ? x1 : 0

-uthr [number] [output file] # y = x1 <= x2 ? x1 : 0

-z2logp [output file] # y = -log10(1 - pz(x))

-z2p [output file] # y = pz(x)

-z2t [df] [output file] # y = qt(pz(x), df)

Home dir C:\Users\zhuho\sdm.conf

aPerforming imgcalc calls

oPerforming imgcalc calls

aCalling web browser to display the report

Prior open browser

After open browser

o

aCalling MRICron to display 3D results

Mricron call: "C:/Users/zhuho/Documents/win/mricron/mricron.exe" D:\Downloads\SdmPsiGui-win64-v6.12\SdmPsiGui-win64-v6.12rc1\bin\windows64\..\..\/share/sdm_template.nii.gz -o D:/Google Drive/Onedrive/Documents/paper/meta/pediatric_OCD/OCD/analysis_OCDTest/OCDTest_z_p_0.05000_10.nii.gz -o D:/Google Drive/Onedrive/Documents/paper/meta/pediatric_OCD/OCD/analysis_OCDTest/OCDTest_z_p_0.05000_10_neg.nii.gz

o

d

I have the same problem. My Os is Windows 10 64. Are there any solutions?

Thanks

Hongru

Home dir C:\Users\zhuho\sdm.conf

Loading study mask gray_matter_2mm

Executing Perm for MyTest with vars ,,, and hyp[1.000000,0.000000,0.000000,0.000000,0.000000]

9 studies included

Using 8 threads

aRecreating studies

file D:\Downloads\SdmPsiGui-win64-v6.12\SdmPsiGui-win64-v6.12rc1\bin\windows64\..\..\/share/indexes_gray_matter_2mm.bin

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oRecreating studies

aLoading imputations

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oLoading imputations

aGetting Null distributions with 8 threads

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%86% Estimated remaining time(s): 686 (ETA 2019-12-05 11:29:17)

%87% Estimated remaining time(s): 637 (ETA 2019-12-05 11:29:16)

%88% Estimated remaining time(s): 588 (ETA 2019-12-05 11:29:16)

%89% Estimated remaining time(s): 539 (ETA 2019-12-05 11:29:14)

%90% Estimated remaining time(s): 490 (ETA 2019-12-05 11:29:14)

%91% Estimated remaining time(s): 440 (ETA 2019-12-05 11:29:12)

%92% Estimated remaining time(s): 391 (ETA 2019-12-05 11:29:10)

%93% Estimated remaining time(s): 342 (ETA 2019-12-05 11:29:10)

%94% Estimated remaining time(s): 293 (ETA 2019-12-05 11:29:08)

%95% Estimated remaining time(s): 244 (ETA 2019-12-05 11:29:07)

%96% Estimated remaining time(s): 195 (ETA 2019-12-05 11:29:06)

%97% Estimated remaining time(s): 146 (ETA 2019-12-05 11:29:04)

%98% Estimated remaining time(s): 97 (ETA 2019-12-05 11:29:02)

%99% Estimated remaining time(s): 48 (ETA 2019-12-05 11:29:01)

oGetting Null distributions

Path to save analysis_MyTest/fwe/maxsMinsZ.asc

aPerforming P-correction

oPerforming P-correction

Saving study mask gray_matter_2mm

m_mask gray_matter_2mm

Done!

IMGCALC IMAGE UTILITY (part of the SDM Tools).

http://www.sdmproject.com/sdmtools/imgca...

Syntaxis:

imgcalc [input file] [arguments]

Arguments:

[nothing] # [useful to save as *.nii.gz]

-abs [output file] # y = abs(x)

-acos [output file] # y = acos(x)

-add [input file or number] [output file] # y = x1 + x2

-asin [output file] # y = asin(x)

-atan [output file] # y = atan(x)

-atlas [output file] # [returns blob and atlas info]

-bin [output file] # y = x ? 1 : 0

-blobs [output file] # [returns blob information]

-compl [output file] # y = 1 - x

-cos [output file] # y = cos(x)

-div [input file or number] [output file] # y = x1 / x2

-ethr [number] [output file] # [cluster extent threshold]

-exp [output file] # y = exp(x)

-log [output file] # y = log(x)

-logp2p [output file] # y = 1 - 10^-x

-logp2t [df] [output file] # y = qt(1 - 10^-x, df)

-logp2z [output file] # y = qz(1 - 10^-x)

-mas [input file] [output file] # y = x2 > 0 ? x1 : 0

-max [input file or number] [output file] # y = max(x1, x2)

-min [input file or number] [output file] # y = min(x1, x2)

-mthr [number] [output file] # [cluster mass threshold]

-mul [input file or number] [output file] # y = x1 * x2

-p2logp [output file] # y = -log10(1 - x)

-p2t [df] [output file] # y = qt(x, df)

-p2z [output file] # y = qz(x)

-pow [input file or number] [output file] # y = x1 ^ x2

-pthr [number] [output file] # [cluster peak threshold]

-recip [output file] # y = 1 / x

-rem [input file or number] [output file] # y = x1 % x2

-s [sigma] [output file] # [Gaussian smoothing]

-sdm # [similar to -atlas but for SDM]

-sdmreg [output file] # [linear reg. to SDM template]

-set_logp # [sets values as -log10(p)]

-set_mni # [sets space as MNI]

-set_p # [sets values as 1-p]

-set_t [df] # [sets values as t(df)]

-set_tal # [sets space as Talairach]

-set_z # [sets values as z]

-sin [output file] # y = sin(x)

-sqr [output file] # y = x^2

-sqrt [output file] # y = sqrt(x)

-sub [input file or number] [output file] # y = x1 - x2

-t2logp [output file] # y = -log10(1 - pt(x, df))

-t2p [output file] # y = pt(x, df)

-t2z [output file] # y = qz(pt(x, df))

-tan [output file] # y = tan(x)

-thr [number] [output file] # y = x1 >= x2 ? x1 : 0

-uthr [number] [output file] # y = x1 <= x2 ? x1 : 0

-z2logp [output file] # y = -log10(1 - pz(x))

-z2p [output file] # y = pz(x)

-z2t [df] [output file] # y = qt(pz(x), df)

a(imgcalc) [foobin] = [foothr] ? 1 : 0

WARNING: File 'foothr' was not found or is not a NIfTI file (unknown extension).

The program will close as this problem could cause fatal errors.

a(imgcalc) [Drive/Onedrive/Documents/paper/meta/pediatric_OCD/OCD/analysis_MyTest/MyTest_z] = [foobin] * [D:/Google]

WARNING: File 'foobin' was not found or is not a NIfTI file (unknown extension).

The program will close as this problem could cause fatal errors.

a(imgcalc) [D:/Google] = clusters from [foomul] with size >= 10

WARNING: File 'foomul' was not found or is not a NIfTI file (unknown extension).

The program will close as this problem could cause fatal errors.

IMGCALC IMAGE UTILITY (part of the SDM Tools).

http://www.sdmproject.com/sdmtools/imgca...

Syntaxis:

imgcalc [input file] [arguments]

Arguments:

[nothing] # [useful to save as *.nii.gz]

-abs [output file] # y = abs(x)

-acos [output file] # y = acos(x)

-add [input file or number] [output file] # y = x1 + x2

-asin [output file] # y = asin(x)

-atan [output file] # y = atan(x)

-atlas [output file] # [returns blob and atlas info]

-bin [output file] # y = x ? 1 : 0

-blobs [output file] # [returns blob information]

-compl [output file] # y = 1 - x

-cos [output file] # y = cos(x)

-div [input file or number] [output file] # y = x1 / x2

-ethr [number] [output file] # [cluster extent threshold]

-exp [output file] # y = exp(x)

-log [output file] # y = log(x)

-logp2p [output file] # y = 1 - 10^-x

-logp2t [df] [output file] # y = qt(1 - 10^-x, df)

-logp2z [output file] # y = qz(1 - 10^-x)

-mas [input file] [output file] # y = x2 > 0 ? x1 : 0

-max [input file or number] [output file] # y = max(x1, x2)

-min [input file or number] [output file] # y = min(x1, x2)

-mthr [number] [output file] # [cluster mass threshold]

-mul [input file or number] [output file] # y = x1 * x2

-p2logp [output file] # y = -log10(1 - x)

-p2t [df] [output file] # y = qt(x, df)

-p2z [output file] # y = qz(x)

-pow [input file or number] [output file] # y = x1 ^ x2

-pthr [number] [output file] # [cluster peak threshold]

-recip [output file] # y = 1 / x

-rem [input file or number] [output file] # y = x1 % x2

-s [sigma] [output file] # [Gaussian smoothing]

-sdm # [similar to -atlas but for SDM]

-sdmreg [output file] # [linear reg. to SDM template]

-set_logp # [sets values as -log10(p)]

-set_mni # [sets space as MNI]

-set_p # [sets values as 1-p]

-set_t [df] # [sets values as t(df)]

-set_tal # [sets space as Talairach]

-set_z # [sets values as z]

-sin [output file] # y = sin(x)

-sqr [output file] # y = x^2

-sqrt [output file] # y = sqrt(x)

-sub [input file or number] [output file] # y = x1 - x2

-t2logp [output file] # y = -log10(1 - pt(x, df))

-t2p [output file] # y = pt(x, df)

-t2z [output file] # y = qz(pt(x, df))

-tan [output file] # y = tan(x)

-thr [number] [output file] # y = x1 >= x2 ? x1 : 0

-uthr [number] [output file] # y = x1 <= x2 ? x1 : 0

-z2logp [output file] # y = -log10(1 - pz(x))

-z2p [output file] # y = pz(x)

-z2t [df] [output file] # y = qt(pz(x), df)

a(imgcalc) [foobin] = [foothr] ? 1 : 0

WARNING: File 'foothr' was not found or is not a NIfTI file (unknown extension).

The program will close as this problem could cause fatal errors.

a(imgcalc) [Drive/Onedrive/Documents/paper/meta/pediatric_OCD/OCD/analysis_MyTest/MyTest_z] = [foobin] * [D:/Google]

WARNING: File 'foobin' was not found or is not a NIfTI file (unknown extension).

The program will close as this problem could cause fatal errors.

a(imgcalc) [foomul2] = [foomul] * -1

WARNING: File 'foomul' was not found or is not a NIfTI file (unknown extension).

The program will close as this problem could cause fatal errors.

a(imgcalc) [D:/Google] = clusters from [foomul2] with size >= 10

WARNING: File 'foomul2' was not found or is not a NIfTI file (unknown extension).

The program will close as this problem could cause fatal errors.

IMGCALC IMAGE UTILITY (part of the SDM Tools).

http://www.sdmproject.com/sdmtools/imgca...

Syntaxis:

imgcalc [input file] [arguments]

Arguments:

[nothing] # [useful to save as *.nii.gz]

-abs [output file] # y = abs(x)

-acos [output file] # y = acos(x)

-add [input file or number] [output file] # y = x1 + x2

-asin [output file] # y = asin(x)

-atan [output file] # y = atan(x)

-atlas [output file] # [returns blob and atlas info]

-bin [output file] # y = x ? 1 : 0

-blobs [output file] # [returns blob information]

-compl [output file] # y = 1 - x

-cos [output file] # y = cos(x)

-div [input file or number] [output file] # y = x1 / x2

-ethr [number] [output file] # [cluster extent threshold]

-exp [output file] # y = exp(x)

-log [output file] # y = log(x)

-logp2p [output file] # y = 1 - 10^-x

-logp2t [df] [output file] # y = qt(1 - 10^-x, df)

-logp2z [output file] # y = qz(1 - 10^-x)

-mas [input file] [output file] # y = x2 > 0 ? x1 : 0

-max [input file or number] [output file] # y = max(x1, x2)

-min [input file or number] [output file] # y = min(x1, x2)

-mthr [number] [output file] # [cluster mass threshold]

-mul [input file or number] [output file] # y = x1 * x2

-p2logp [output file] # y = -log10(1 - x)

-p2t [df] [output file] # y = qt(x, df)

-p2z [output file] # y = qz(x)

-pow [input file or number] [output file] # y = x1 ^ x2

-pthr [number] [output file] # [cluster peak threshold]

-recip [output file] # y = 1 / x

-rem [input file or number] [output file] # y = x1 % x2

-s [sigma] [output file] # [Gaussian smoothing]

-sdm # [similar to -atlas but for SDM]

-sdmreg [output file] # [linear reg. to SDM template]

-set_logp # [sets values as -log10(p)]

-set_mni # [sets space as MNI]

-set_p # [sets values as 1-p]

-set_t [df] # [sets values as t(df)]

-set_tal # [sets space as Talairach]

-set_z # [sets values as z]

-sin [output file] # y = sin(x)

-sqr [output file] # y = x^2

-sqrt [output file] # y = sqrt(x)

-sub [input file or number] [output file] # y = x1 - x2

-t2logp [output file] # y = -log10(1 - pt(x, df))

-t2p [output file] # y = pt(x, df)

-t2z [output file] # y = qz(pt(x, df))

-tan [output file] # y = tan(x)

-thr [number] [output file] # y = x1 >= x2 ? x1 : 0

-uthr [number] [output file] # y = x1 <= x2 ? x1 : 0

-z2logp [output file] # y = -log10(1 - pz(x))

-z2p [output file] # y = pz(x)

-z2t [df] [output file] # y = qt(pz(x), df)

Home dir C:\Users\zhuho\sdm.conf

aPerforming imgcalc calls

oPerforming imgcalc calls

aCalling web browser to display the report

Prior open browser

After open browser

o

aCalling MRICron to display 3D results

Mricron call: "C:/Users/zhuho/Documents/win/mricron/mricron.exe" D:\Downloads\SdmPsiGui-win64-v6.12\SdmPsiGui-win64-v6.12rc1\bin\windows64\..\..\/share/sdm_template.nii.gz -o D:/Google Drive/Onedrive/Documents/paper/meta/pediatric_OCD/OCD/analysis_MyTest/MyTest_z_p_0.05000_10.nii.gz -o D:/Google Drive/Onedrive/Documents/paper/meta/pediatric_OCD/OCD/analysis_MyTest/MyTest_z_p_0.05000_10_neg.nii.gz

o

d

getprogdir entry argv D:\Downloads\SdmPsiGui-win64-v6.12\SdmPsiGui-win64-v6.12rc1\bin\windows64/sdm_core

getprogdir exit pdir D:\Downloads\SdmPsiGui-win64-v6.12\SdmPsiGui-win64-v6.12rc1

Home dir C:\Users\zhuho\sdm.conf

aConducting globals analysis

o

aCalling web browser to display the report

Prior open browser

After open browser

o

d

Home dir C:\Users\zhuho\sdm.conf

Home dir C:\Users\zhuho\sdm.conf

Home dir C:\Users\zhuho\sdm.conf

Load atlas D:\Downloads\SdmPsiGui-win64-v6.12\SdmPsiGui-win64-v6.12rc1\bin\windows64\..\..\/share/atlas_aal_cts_2mm.nii.gz

length 902629 sdm1_lengt 902629

aAnalyzing coordinates

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o

aCreating anisotropic space

sdm_s_dir got D:\Downloads\SdmPsiGui-win64-v6.12\SdmPsiGui-win64-v6.12rc1\bin\windows64\..\..\

Path for cor template D:\Downloads\SdmPsiGui-win64-v6.12\SdmPsiGui-win64-v6.12rc1\bin\windows64\..\..\/share/cor_gray_matter_2mm.nii.gz

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o

aPreprocessing studies

%9% Estimated remaining time(s): 30 (ETA 2019-12-05 11:40:17)

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Saving study mask gray_matter_2mm

m_mask gray_matter_2mm

o

aCalling web browser to display the report

Prior open browser

After open browser

o

d

getprogdir entry argv D:\Downloads\SdmPsiGui-win64-v6.12\SdmPsiGui-win64-v6.12rc1\bin\windows64/sdm_core

getprogdir exit pdir D:\Downloads\SdmPsiGui-win64-v6.12\SdmPsiGui-win64-v6.12rc1

Home dir C:\Users\zhuho\sdm.conf

aConducting globals analysis

o

aCalling web browser to display the report

Prior open browser

After open browser

o

d

Home dir C:\Users\zhuho\sdm.conf

Home dir C:\Users\zhuho\sdm.conf

Home dir C:\Users\zhuho\sdm.conf

Load atlas D:\Downloads\SdmPsiGui-win64-v6.12\SdmPsiGui-win64-v6.12rc1\bin\windows64\..\..\/share/atlas_aal_cts_2mm.nii.gz

length 902629 sdm1_lengt 902629

aAnalyzing coordinates

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o

aCreating anisotropic space

sdm_s_dir got D:\Downloads\SdmPsiGui-win64-v6.12\SdmPsiGui-win64-v6.12rc1\bin\windows64\..\..\

Path for cor template D:\Downloads\SdmPsiGui-win64-v6.12\SdmPsiGui-win64-v6.12rc1\bin\windows64\..\..\/share/cor_gray_matter_2mm.nii.gz

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o

aPreprocessing studies

%9% Estimated remaining time(s): 20 (ETA 2019-12-05 11:52:00)

%18% Estimated remaining time(s): 31 (ETA 2019-12-05 11:52:16)

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Saving study mask gray_matter_2mm

m_mask gray_matter_2mm

o

aCalling web browser to display the report

Prior open browser

After open browser

o

d

Home dir C:\Users\zhuho\sdm.conf

iExecuting mle for 'OCDTest' with var1 '' var2 '' var3 '' var4 '' hyp=[1.000000,0.000000,0.000000,0.000000,0.000000] and filter ''

Loading study mask gray_matter_2mm

aStarting MLE...

Using 8 threads

ncoef: 1

aEstimating coefficients...

nLoo: 1

%9% Estimated remaining time(s): 20 (ETA 2019-12-05 11:54:03)

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oEstimating coefficients...

aEstimating tau2...

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oEstimating tau2...

Saving study mask gray_matter_2mm

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incl is 10

dMLE

Loading study mask gray_matter_2mm

iExecuting MI for s_name OCDTest with 50 imputs and filter ''

aStarting MI... with nImputs 50

10 studies included in MI

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Saving study mask gray_matter_2mm

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dMI

Loading study mask gray_matter_2mm

iRunning meta for OCDTest with var1 '' var2 '' var3 '' var4''

10 studies included in meta

aMeta

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Saving study mask gray_matter_2mm

m_mask gray_matter_2mm

dMeta

Loading study mask gray_matter_2mm

aPool

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a(imgcalc) [analysis_OCDTest/uncorrp.nii.gz] = "1-p values" from "z scores" in [analysis_OCDTest/OCDTest_z.nii.gz]

o

a(imgcalc) [analysis_OCDTest/uncorrp_neg.nii.gz] = 1 - [analysis_OCDTest/uncorrp.nii.gz]

o

Saving study mask gray_matter_2mm

m_mask gray_matter_2mm

dPool

Home dir C:\Users\zhuho\sdm.conf

Loading study mask gray_matter_2mm

Executing Perm for OCDTest with vars ,,, and hyp[1.000000,0.000000,0.000000,0.000000,0.000000]

10 studies included

Using 9 threads

aRecreating studies

file D:\Downloads\SdmPsiGui-win64-v6.12\SdmPsiGui-win64-v6.12rc1\bin\windows64\..\..\/share/indexes_gray_matter_2mm.bin

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oRecreating studies

aLoading imputations

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%74% Estimated remaining time(s): 1 (ETA 2019-12-05 12:10:07)

%76% Estimated remaining time(s): 0 (ETA 2019-12-05 12:10:06)

%78% Estimated remaining time(s): 0 (ETA 2019-12-05 12:10:06)

%80% Estimated remaining time(s): 0 (ETA 2019-12-05 12:10:06)

%82% Estimated remaining time(s): 0 (ETA 2019-12-05 12:10:06)

%84% Estimated remaining time(s): 0 (ETA 2019-12-05 12:10:06)

%86% Estimated remaining time(s): 0 (ETA 2019-12-05 12:10:06)

%88% Estimated remaining time(s): 0 (ETA 2019-12-05 12:10:06)

%90% Estimated remaining time(s): 0 (ETA 2019-12-05 12:10:07)

%92% Estimated remaining time(s): 0 (ETA 2019-12-05 12:10:07)

%94% Estimated remaining time(s): 0 (ETA 2019-12-05 12:10:07)

%96% Estimated remaining time(s): 0 (ETA 2019-12-05 12:10:07)

%98% Estimated remaining time(s): 0 (ETA 2019-12-05 12:10:07)

oLoading imputations

aGetting Null distributions with 9 threads

%1% Estimated remaining time(s): 6831 (ETA 2019-12-05 14:05:07)

%2% Estimated remaining time(s): 6370 (ETA 2019-12-05 13:58:27)

%3% Estimated remaining time(s): 5917 (ETA 2019-12-05 13:51:47)

%4% Estimated remaining time(s): 5640 (ETA 2019-12-05 13:48:02)

%5% Estimated remaining time(s): 5491 (ETA 2019-12-05 13:46:27)

%6% Estimated remaining time(s): 5405 (ETA 2019-12-05 13:45:57)

%7% Estimated remaining time(s): 5327 (ETA 2019-12-05 13:45:35)

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%9% Estimated remaining time(s): 5156 (ETA 2019-12-05 13:44:33)

%10% Estimated remaining time(s): 5094 (ETA 2019-12-05 13:44:27)

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%12% Estimated remaining time(s): 4942 (ETA 2019-12-05 13:43:43)

%13% Estimated remaining time(s): 4851 (ETA 2019-12-05 13:43:03)

%14% Estimated remaining time(s): 4773 (ETA 2019-12-05 13:42:37)

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%17% Estimated remaining time(s): 4560 (ETA 2019-12-05 13:41:41)

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%20% Estimated remaining time(s): 4364 (ETA 2019-12-05 13:41:02)

%21% Estimated remaining time(s): 4299 (ETA 2019-12-05 13:40:49)

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%23% Estimated remaining time(s): 4191 (ETA 2019-12-05 13:40:50)

%24% Estimated remaining time(s): 4132 (ETA 2019-12-05 13:40:44)

%25% Estimated remaining time(s): 4071 (ETA 2019-12-05 13:40:35)

%26% Estimated remaining time(s): 4018 (ETA 2019-12-05 13:40:37)

%27% Estimated remaining time(s): 3960 (ETA 2019-12-05 13:40:32)

%28% Estimated remaining time(s): 3906 (ETA 2019-12-05 13:40:32)

%29% Estimated remaining time(s): 3848 (ETA 2019-12-05 13:40:27)

%30% Estimated remaining time(s): 3796 (ETA 2019-12-05 13:40:30)

%31% Estimated remaining time(s): 3741 (ETA 2019-12-05 13:40:29)

%32% Estimated remaining time(s): 3686 (ETA 2019-12-05 13:40:28)

%33% Estimated remaining time(s): 3630 (ETA 2019-12-05 13:40:25)

%34% Estimated remaining time(s): 3571 (ETA 2019-12-05 13:40:18)

%35% Estimated remaining time(s): 3513 (ETA 2019-12-05 13:40:12)

%36% Estimated remaining time(s): 3457 (ETA 2019-12-05 13:40:09)

%37% Estimated remaining time(s): 3398 (ETA 2019-12-05 13:40:01)

%38% Estimated remaining time(s): 3339 (ETA 2019-12-05 13:39:53)

%39% Estimated remaining time(s): 3283 (ETA 2019-12-05 13:39:49)

%40% Estimated remaining time(s): 3226 (ETA 2019-12-05 13:39:44)

%41% Estimated remaining time(s): 3168 (ETA 2019-12-05 13:39:37)

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%43% Estimated remaining time(s): 3055 (ETA 2019-12-05 13:39:27)

%44% Estimated remaining time(s): 2999 (ETA 2019-12-05 13:39:23)

%45% Estimated remaining time(s): 2943 (ETA 2019-12-05 13:39:18)

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%47% Estimated remaining time(s): 2830 (ETA 2019-12-05 13:39:07)

%48% Estimated remaining time(s): 2775 (ETA 2019-12-05 13:39:04)

%49% Estimated remaining time(s): 2720 (ETA 2019-12-05 13:39:01)

%50% Estimated remaining time(s): 2665 (ETA 2019-12-05 13:38:57)

%51% Estimated remaining time(s): 2609 (ETA 2019-12-05 13:38:52)

%52% Estimated remaining time(s): 2553 (ETA 2019-12-05 13:38:46)

%53% Estimated remaining time(s): 2498 (ETA 2019-12-05 13:38:43)

%54% Estimated remaining time(s): 2443 (ETA 2019-12-05 13:38:39)

%55% Estimated remaining time(s): 2389 (ETA 2019-12-05 13:38:37)

%56% Estimated remaining time(s): 2335 (ETA 2019-12-05 13:38:35)

%57% Estimated remaining time(s): 2281 (ETA 2019-12-05 13:38:32)

%58% Estimated remaining time(s): 2226 (ETA 2019-12-05 13:38:28)

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%62% Estimated remaining time(s): 2011 (ETA 2019-12-05 13:38:20)

%63% Estimated remaining time(s): 1958 (ETA 2019-12-05 13:38:19)

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%65% Estimated remaining time(s): 1850 (ETA 2019-12-05 13:38:14)

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%74% Estimated remaining time(s): 1371 (ETA 2019-12-05 13:38:01)

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%98% Estimated remaining time(s): 104 (ETA 2019-12-05 13:37:32)

%99% Estimated remaining time(s): 52 (ETA 2019-12-05 13:37:32)

oGetting Null distributions

Path to save analysis_OCDTest/fwe/maxsMinsZ.asc

aPerforming P-correction

oPerforming P-correction

Saving study mask gray_matter_2mm

m_mask gray_matter_2mm

Done!

IMGCALC IMAGE UTILITY (part of the SDM Tools).

http://www.sdmproject.com/sdmtools/imgca...

Syntaxis:

imgcalc [input file] [arguments]

Arguments:

[nothing] # [useful to save as *.nii.gz]

-abs [output file] # y = abs(x)

-acos [output file] # y = acos(x)

-add [input file or number] [output file] # y = x1 + x2

-asin [output file] # y = asin(x)

-atan [output file] # y = atan(x)

-atlas [output file] # [returns blob and atlas info]

-bin [output file] # y = x ? 1 : 0

-blobs [output file] # [returns blob information]

-compl [output file] # y = 1 - x

-cos [output file] # y = cos(x)

-div [input file or number] [output file] # y = x1 / x2

-ethr [number] [output file] # [cluster extent threshold]

-exp [output file] # y = exp(x)

-log [output file] # y = log(x)

-logp2p [output file] # y = 1 - 10^-x

-logp2t [df] [output file] # y = qt(1 - 10^-x, df)

-logp2z [output file] # y = qz(1 - 10^-x)

-mas [input file] [output file] # y = x2 > 0 ? x1 : 0

-max [input file or number] [output file] # y = max(x1, x2)

-min [input file or number] [output file] # y = min(x1, x2)

-mthr [number] [output file] # [cluster mass threshold]

-mul [input file or number] [output file] # y = x1 * x2

-p2logp [output file] # y = -log10(1 - x)

-p2t [df] [output file] # y = qt(x, df)

-p2z [output file] # y = qz(x)

-pow [input file or number] [output file] # y = x1 ^ x2

-pthr [number] [output file] # [cluster peak threshold]

-recip [output file] # y = 1 / x

-rem [input file or number] [output file] # y = x1 % x2

-s [sigma] [output file] # [Gaussian smoothing]

-sdm # [similar to -atlas but for SDM]

-sdmreg [output file] # [linear reg. to SDM template]

-set_logp # [sets values as -log10(p)]

-set_mni # [sets space as MNI]

-set_p # [sets values as 1-p]

-set_t [df] # [sets values as t(df)]

-set_tal # [sets space as Talairach]

-set_z # [sets values as z]

-sin [output file] # y = sin(x)

-sqr [output file] # y = x^2

-sqrt [output file] # y = sqrt(x)

-sub [input file or number] [output file] # y = x1 - x2

-t2logp [output file] # y = -log10(1 - pt(x, df))

-t2p [output file] # y = pt(x, df)

-t2z [output file] # y = qz(pt(x, df))

-tan [output file] # y = tan(x)

-thr [number] [output file] # y = x1 >= x2 ? x1 : 0

-uthr [number] [output file] # y = x1 <= x2 ? x1 : 0

-z2logp [output file] # y = -log10(1 - pz(x))

-z2p [output file] # y = pz(x)

-z2t [df] [output file] # y = qt(pz(x), df)

a(imgcalc) [foobin] = [foothr] ? 1 : 0

WARNING: File 'foothr' was not found or is not a NIfTI file (unknown extension).

The program will close as this problem could cause fatal errors.

a(imgcalc) [Drive/Onedrive/Documents/paper/meta/pediatric_OCD/OCD/analysis_OCDTest/OCDTest_z] = [foobin] * [D:/Google]

WARNING: File 'foobin' was not found or is not a NIfTI file (unknown extension).

The program will close as this problem could cause fatal errors.

a(imgcalc) [D:/Google] = clusters from [foomul] with size >= 10

WARNING: File 'foomul' was not found or is not a NIfTI file (unknown extension).

The program will close as this problem could cause fatal errors.

IMGCALC IMAGE UTILITY (part of the SDM Tools).

http://www.sdmproject.com/sdmtools/imgca...

Syntaxis:

imgcalc [input file] [arguments]

Arguments:

[nothing] # [useful to save as *.nii.gz]

-abs [output file] # y = abs(x)

-acos [output file] # y = acos(x)

-add [input file or number] [output file] # y = x1 + x2

-asin [output file] # y = asin(x)

-atan [output file] # y = atan(x)

-atlas [output file] # [returns blob and atlas info]

-bin [output file] # y = x ? 1 : 0

-blobs [output file] # [returns blob information]

-compl [output file] # y = 1 - x

-cos [output file] # y = cos(x)

-div [input file or number] [output file] # y = x1 / x2

-ethr [number] [output file] # [cluster extent threshold]

-exp [output file] # y = exp(x)

-log [output file] # y = log(x)

-logp2p [output file] # y = 1 - 10^-x

-logp2t [df] [output file] # y = qt(1 - 10^-x, df)

-logp2z [output file] # y = qz(1 - 10^-x)

-mas [input file] [output file] # y = x2 > 0 ? x1 : 0

-max [input file or number] [output file] # y = max(x1, x2)

-min [input file or number] [output file] # y = min(x1, x2)

-mthr [number] [output file] # [cluster mass threshold]

-mul [input file or number] [output file] # y = x1 * x2

-p2logp [output file] # y = -log10(1 - x)

-p2t [df] [output file] # y = qt(x, df)

-p2z [output file] # y = qz(x)

-pow [input file or number] [output file] # y = x1 ^ x2

-pthr [number] [output file] # [cluster peak threshold]

-recip [output file] # y = 1 / x

-rem [input file or number] [output file] # y = x1 % x2

-s [sigma] [output file] # [Gaussian smoothing]

-sdm # [similar to -atlas but for SDM]

-sdmreg [output file] # [linear reg. to SDM template]

-set_logp # [sets values as -log10(p)]

-set_mni # [sets space as MNI]

-set_p # [sets values as 1-p]

-set_t [df] # [sets values as t(df)]

-set_tal # [sets space as Talairach]

-set_z # [sets values as z]

-sin [output file] # y = sin(x)

-sqr [output file] # y = x^2

-sqrt [output file] # y = sqrt(x)

-sub [input file or number] [output file] # y = x1 - x2

-t2logp [output file] # y = -log10(1 - pt(x, df))

-t2p [output file] # y = pt(x, df)

-t2z [output file] # y = qz(pt(x, df))

-tan [output file] # y = tan(x)

-thr [number] [output file] # y = x1 >= x2 ? x1 : 0

-uthr [number] [output file] # y = x1 <= x2 ? x1 : 0

-z2logp [output file] # y = -log10(1 - pz(x))

-z2p [output file] # y = pz(x)

-z2t [df] [output file] # y = qt(pz(x), df)

a(imgcalc) [foobin] = [foothr] ? 1 : 0

WARNING: File 'foothr' was not found or is not a NIfTI file (unknown extension).

The program will close as this problem could cause fatal errors.

a(imgcalc) [Drive/Onedrive/Documents/paper/meta/pediatric_OCD/OCD/analysis_OCDTest/OCDTest_z] = [foobin] * [D:/Google]

WARNING: File 'foobin' was not found or is not a NIfTI file (unknown extension).

The program will close as this problem could cause fatal errors.

a(imgcalc) [foomul2] = [foomul] * -1

WARNING: File 'foomul' was not found or is not a NIfTI file (unknown extension).

The program will close as this problem could cause fatal errors.

a(imgcalc) [D:/Google] = clusters from [foomul2] with size >= 10

WARNING: File 'foomul2' was not found or is not a NIfTI file (unknown extension).

The program will close as this problem could cause fatal errors.

IMGCALC IMAGE UTILITY (part of the SDM Tools).

http://www.sdmproject.com/sdmtools/imgca...

Syntaxis:

imgcalc [input file] [arguments]

Arguments:

[nothing] # [useful to save as *.nii.gz]

-abs [output file] # y = abs(x)

-acos [output file] # y = acos(x)

-add [input file or number] [output file] # y = x1 + x2

-asin [output file] # y = asin(x)

-atan [output file] # y = atan(x)

-atlas [output file] # [returns blob and atlas info]

-bin [output file] # y = x ? 1 : 0

-blobs [output file] # [returns blob information]

-compl [output file] # y = 1 - x

-cos [output file] # y = cos(x)

-div [input file or number] [output file] # y = x1 / x2

-ethr [number] [output file] # [cluster extent threshold]

-exp [output file] # y = exp(x)

-log [output file] # y = log(x)

-logp2p [output file] # y = 1 - 10^-x

-logp2t [df] [output file] # y = qt(1 - 10^-x, df)

-logp2z [output file] # y = qz(1 - 10^-x)

-mas [input file] [output file] # y = x2 > 0 ? x1 : 0

-max [input file or number] [output file] # y = max(x1, x2)

-min [input file or number] [output file] # y = min(x1, x2)

-mthr [number] [output file] # [cluster mass threshold]

-mul [input file or number] [output file] # y = x1 * x2

-p2logp [output file] # y = -log10(1 - x)

-p2t [df] [output file] # y = qt(x, df)

-p2z [output file] # y = qz(x)

-pow [input file or number] [output file] # y = x1 ^ x2

-pthr [number] [output file] # [cluster peak threshold]

-recip [output file] # y = 1 / x

-rem [input file or number] [output file] # y = x1 % x2

-s [sigma] [output file] # [Gaussian smoothing]

-sdm # [similar to -atlas but for SDM]

-sdmreg [output file] # [linear reg. to SDM template]

-set_logp # [sets values as -log10(p)]

-set_mni # [sets space as MNI]

-set_p # [sets values as 1-p]

-set_t [df] # [sets values as t(df)]

-set_tal # [sets space as Talairach]

-set_z # [sets values as z]

-sin [output file] # y = sin(x)

-sqr [output file] # y = x^2

-sqrt [output file] # y = sqrt(x)

-sub [input file or number] [output file] # y = x1 - x2

-t2logp [output file] # y = -log10(1 - pt(x, df))

-t2p [output file] # y = pt(x, df)

-t2z [output file] # y = qz(pt(x, df))

-tan [output file] # y = tan(x)

-thr [number] [output file] # y = x1 >= x2 ? x1 : 0

-uthr [number] [output file] # y = x1 <= x2 ? x1 : 0

-z2logp [output file] # y = -log10(1 - pz(x))

-z2p [output file] # y = pz(x)

-z2t [df] [output file] # y = qt(pz(x), df)

Home dir C:\Users\zhuho\sdm.conf

aPerforming imgcalc calls

oPerforming imgcalc calls

aCalling web browser to display the report

Prior open browser

After open browser

o

aCalling MRICron to display 3D results

Mricron call: "C:/Users/zhuho/Documents/win/mricron/mricron.exe" D:\Downloads\SdmPsiGui-win64-v6.12\SdmPsiGui-win64-v6.12rc1\bin\windows64\..\..\/share/sdm_template.nii.gz -o D:/Google Drive/Onedrive/Documents/paper/meta/pediatric_OCD/OCD/analysis_OCDTest/OCDTest_z_p_0.05000_10.nii.gz -o D:/Google Drive/Onedrive/Documents/paper/meta/pediatric_OCD/OCD/analysis_OCDTest/OCDTest_z_p_0.05000_10_neg.nii.gz

o

d

## Threaded View

Title | Author | Date |
---|---|---|

Tinya Chang |
Aug 14, 2019 | |

Anton Albajes-Eizagirre |
Nov 26, 2019 | |

Rebecca Hu |
Sep 12, 2019 | |

Rebecca Hu |
Sep 12, 2019 | |

e0046902 |
Nov 3, 2019 | |

Arnaud Leroy |
Nov 19, 2019 | |

Anton Albajes-Eizagirre |
Aug 16, 2019 | |

Brandon Gunasekera |
Sep 3, 2019 | |

Hongru Zhu |
Dec 5, 2019 | |

Anton Albajes-Eizagirre |
Dec 17, 2019 | |

Hongru Zhu |
Dec 22, 2019 | |

Anton Albajes-Eizagirre |
Jan 7, 2020 | |