help
help > RE: CONN compatible with HCP MSM-All CIFTI data?
Apr 4, 2020 11:04 PM | Alfonso Nieto-Castanon - Boston University
RE: CONN compatible with HCP MSM-All CIFTI data?
Hi Eric,
Sorry, CONN is not (at least yet) compatible with CIFTI-formatted data. Nevertheless you may enter the HCP ICA-Fix denoised nifti functional data (e.g. files rfMRI_REST*_clean.nii.gz; see for example the script conn_batch_humanconnectome.m) and have CONN extract the surface-level data from it directly (e.g. running the last portion of the default preprocessing pipeline for surface-based analyses, mainly the preprocessing steps 'functional_surface_coreg&resample' and 'functional_surface_smooth')
Best
Alfonso
Originally posted by Eric Rawls:
Sorry, CONN is not (at least yet) compatible with CIFTI-formatted data. Nevertheless you may enter the HCP ICA-Fix denoised nifti functional data (e.g. files rfMRI_REST*_clean.nii.gz; see for example the script conn_batch_humanconnectome.m) and have CONN extract the surface-level data from it directly (e.g. running the last portion of the default preprocessing pipeline for surface-based analyses, mainly the preprocessing steps 'functional_surface_coreg&resample' and 'functional_surface_smooth')
Best
Alfonso
Originally posted by Eric Rawls:
Hi all, I searched the forum but I only found
two (unanswered) threads asking about the compatibility of the CONN
toolbox with CIFTI data.
Is CONN compatible with CIFTI-formatted fMRI inputs? I would like to analyze the human connectome project MSM-All registered ICA-FIX denoised CIFTI data in CONN but I have not found any documentation on this.
Note, I was able to use the subject-level Freesurfer (.mgz) MRI as a structural file in CONN, but that is not what I'm going for, and I have not been able to properly import the surface-registered functional data.
If CONN is not compatible with CIFTI data, can anyone recommend a graph theory package that is? Any help is much appreciated!
Eric
Is CONN compatible with CIFTI-formatted fMRI inputs? I would like to analyze the human connectome project MSM-All registered ICA-FIX denoised CIFTI data in CONN but I have not found any documentation on this.
Note, I was able to use the subject-level Freesurfer (.mgz) MRI as a structural file in CONN, but that is not what I'm going for, and I have not been able to properly import the surface-registered functional data.
If CONN is not compatible with CIFTI data, can anyone recommend a graph theory package that is? Any help is much appreciated!
Eric
Threaded View
| Title | Author | Date |
|---|---|---|
| Eric Rawls | Apr 3, 2020 | |
| Alfonso Nieto-Castanon | Apr 4, 2020 | |