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help > RE: Execute App2 from command line on directory of 2d tif images (image series)
May 5, 2020 05:05 PM | Hanchuan Peng
RE: Execute App2 from command line on directory of 2d tif images (image series)
Yes, you can import a series of image
sections and save as a 3D tiff stack. Check the 'import' function
in main menu.
No, we do not support running APP2 for the 2D folder. The code is there, you may write a wrapper to load data first followed by APP2 tracing.
Originally posted by Matt Mallory:
No, we do not support running APP2 for the 2D folder. The code is there, you may write a wrapper to load data first followed by APP2 tracing.
Originally posted by Matt Mallory:
Hello,
I was wondering if there is a way to run app2 from command line that will execute neuron tracing on a directory of 2d tif images, that when stacked together will construct the 3d neuron of interest. The script will not run if a .tif image is not given in the /i parameter. (Windows 10 user, Vaa3d v3.475)
Alternatively, is there a command line functionality in Vaa3d that creates an image stack from an image series?
Thank you,
Matt
I was wondering if there is a way to run app2 from command line that will execute neuron tracing on a directory of 2d tif images, that when stacked together will construct the 3d neuron of interest. The script will not run if a .tif image is not given in the /i parameter. (Windows 10 user, Vaa3d v3.475)
Alternatively, is there a command line functionality in Vaa3d that creates an image stack from an image series?
Thank you,
Matt
Threaded View
Title | Author | Date |
---|---|---|
Matt Mallory | Apr 9, 2020 | |
Hanchuan Peng | May 5, 2020 | |
Matt Mallory | May 11, 2020 | |
Matt Mallory | May 11, 2020 | |
Hanchuan Peng | May 14, 2020 | |
Matt Mallory | May 20, 2020 | |