help > RE: JHU.nii and JHU.txt files in C:\Program Files\MRIcron\Resources\templates
May 22, 2020  07:05 AM | Lukas Van Oudenhove
RE: JHU.nii and JHU.txt files in C:\Program Files\MRIcron\Resources\templates
Hi again Chris,

Sorry having to bother you again!

When overlaying on the ch2better template in MRIcron, I noticed that it does not seem to be well-aligned with the MNI template (see attached screenshot).

This may be due to what I found in the README you sent me the GitHub link for: "Data warped to match stroke control dataset (ventricles larger and some cortical atrophy relative to young adults)".

Hence, I guess it would not be recommended to use this particular version of the atlas in studies on healthy adults?!

However, based on the readme I get the impression that there may also be an MNI space version of the atlas which is not warped to a stroke control dataset? Any idea how we could retrieve it?

I was also a little confused by the paper you sent as it compares different denoising pipelines but does not seem to be specifically mentioning the atlas?
Do you have any other references or contact info?

Thanks a lot in advance again!

Best wishes,

Lukas

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TitleAuthorDate
Lukas Van Oudenhove May 20, 2020
Chris Rorden May 22, 2020
Lukas Van Oudenhove May 22, 2020
Chris Rorden May 20, 2020
RE: JHU.nii and JHU.txt files in C:\Program Files\MRIcron\Resources\templates
Lukas Van Oudenhove May 22, 2020
Lukas Van Oudenhove May 22, 2020