open-discussion
open-discussion > RE: Posterior to Anterior Flip
Jul 3, 2020 02:07 PM | Martin Styner
RE: Posterior to Anterior Flip
We use dcm2nii for our fMRI data (dcm2nii is a very nice tool), but
have made the experience that DWIConvert provides better conversion
from DICOM (rarely needs manual correction), particular for Siemens
data. We commonly use the Bmatrix option of DWIConvert that
computes the actually applied b-val and b-vec rather than those
recorded in the DICOM tags (which commonly are the prescribed
values and not the actually applied ones, though in truth the
difference is minimal).
If your folks prefer NITFI then they could also use DWIConvert --conversionMode DicomToFSL
Martin
If your folks prefer NITFI then they could also use DWIConvert --conversionMode DicomToFSL
Martin
Threaded View
Title | Author | Date |
---|---|---|
Steven Meisler | Jul 2, 2020 | |
Beth Kruse | Nov 8, 2021 | |
Martin Styner | Nov 9, 2021 | |
Beth Kruse | Nov 12, 2021 | |
Martin Styner | Jul 2, 2020 | |
Steven Meisler | Jul 2, 2020 | |
Martin Styner | Jul 3, 2020 | |
Steven Meisler | Jul 3, 2020 | |
Martin Styner | Jul 3, 2020 | |
Steven Meisler | Jul 3, 2020 | |
Martin Styner | Jul 3, 2020 | |
Steven Meisler | Jul 3, 2020 | |
Martin Styner | Jul 3, 2020 | |
Steven Meisler | Jul 2, 2020 | |