C:\CMTK_Registration\CMTKreg>C:\CMTK_Registration\CMTK\bin\reformatx -v --outputtype "uint" --pv -o mylabels2.nrrd --floating C:\CMTK_Registration\CMTKreg\images\Stack_celllabel32b_01.nrrd C:\CMTK_Registration\CMTKreg\template\Ref20131120pt14pl2_Randlett_stackrev_01.nrrd C:\CMTK_Registration\CMTKreg\results\Registration_318_vs_template\Registration\warp\Ref20131120pt14pl2_MIP318zf01_warp_m0g80c8e1e-1x52r3.list
Reading transformation from studylist C:\CMTK_Registration\CMTKreg\results\Registration_318_vs_template\Registration\warp\Ref20131120pt14pl2_MIP318zf01_warp_m0g80c8e1e-1x52r3.list
WARNING: image does not have valid orientation meta information; cannot reorient.
WARNING: image does not have valid orientation meta information; cannot reorient.

C:\CMTK_Registration\CMTKreg>




This is what I get. The file mylabels2.nrrd is not created

Francesco