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questions > RE: dcm2niix slice timing specifications
Sep 5, 2020 02:09 AM | Chris Rorden
RE: dcm2niix slice timing specifications
You may want to look at my slice timing page. As described in the
[url=https://www.siemens-healthineers.com/siemens_hwem-hwem_ssxa_websites-context-root/wcm/idc/groups/public/@global/@imaging/@mri/documents/download/mdaz/nzmy/~edisp/mri_60_graessner-01646277.pdf]Siemens
white paper, [/url]axial EPI slices are always saved in the
foot-head order, regardless of the order that the data was
acquired. Therefore, the first slice in the array corresponds with
the slice closest to the foot, and the final slice saved to disk is
the most superior. The slice timing array in the JSON file suggests
data is saved in an interleaved descending order, with the most
superior slice acquired first (time zero). So the order slices were
acquired was 32,30,28..2, 31,29,...1, with the final (most
inferior) slice acquired 1.9425s after the first (most superior)
slice. See the BIDS specification for the formal definition. Note that storing the timing is more
useful than storing the order: sparse scans can have a delay after
the final slice before the next slice in the subsequent volume.
Likewise, for multi band sequence you will have multiple slices
with the same slice times.
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Title | Author | Date |
---|---|---|
Brittany Cassidy | Sep 5, 2020 | |
Chris Rorden | Sep 7, 2020 | |
Chris Rorden | Sep 5, 2020 | |
Brittany Cassidy | Sep 5, 2020 | |