dke-questions > Bruker data Command line
Sep 8, 2020  12:09 PM | psikorova
Bruker data Command line
Good morning,

I am new to using the DKE software and I have been struggling with running the image processing on my Bruker data. I am trying to upload my data using the command line, since the GUI does not support Bruker data - however, after running the process for circa 30 minutes (the coregistration), it stops due to a significant number of errors. I have been trying to figure out the reason for such early and unexpected stopping, but so far I was not succesful, thus I am kindly asking here for help.

The list of errors I get:
Error using spm_vol>subfunc (line 101)
File "" does not exist.
Error in spm_vol>subfunc1 (line 77)
Error in spm_vol>subfunc2 (line 69)
Error in spm_vol (line 54)
Error in spm_reslice (line 121)
Error in dke_preprocess_bruker>coregister (line 274)
Error in dke_preprocess_bruker>(parfor body) (line 125)
Error in parallel_function (line 470)
Error in dke_preprocess_bruker (line 120)
Error in dke (line 176)

I am pretty positive there must be something wrong in my DKE parameters file, but I just cannot figure out what exactly. Therefore, I attach my parameters file (par.dat). I am working with 5 different b values (300, 600, 900, 1200 and 1500) and 30 gradient directions.

Thank you very much for any help,
Pavlína Sikorová
Attachment: par.dat

Threaded View

TitleAuthorDate
Bruker data Command line
psikorova Sep 8, 2020
Emilie McKinnon Sep 10, 2020
psikorova Sep 11, 2020
Emilie McKinnon Sep 11, 2020
psikorova Sep 16, 2020
Emilie McKinnon Sep 16, 2020
psikorova Sep 16, 2020
Emilie McKinnon Sep 16, 2020
psikorova Sep 16, 2020
Emilie McKinnon Sep 16, 2020
psikorova Sep 16, 2020
Emilie McKinnon Sep 16, 2020
psikorova Sep 16, 2020
Emilie McKinnon Sep 8, 2020
psikorova Sep 9, 2020
Emilie McKinnon Sep 9, 2020
psikorova Sep 9, 2020
Emilie McKinnon Sep 9, 2020
Emilie McKinnon Sep 9, 2020
psikorova Sep 10, 2020