help > Surface-based Preproc: Substitute CAT12 output for Freesurfer output
Sep 15, 2020  01:09 PM | Andrew Lynn - Brown University
Surface-based Preproc: Substitute CAT12 output for Freesurfer output
I'm new to CONN toolbox preprocessing pipelines. I need to preprocess using the surface-space pipeline (defaultSS)

I began by preprocessing my anatomical data using CAT12 because the Freesurfer pipeline results in many skullstrip errors. Both outputs have mri/ and surf/ directories but the naming conventions are different for the brain mask, T1 and surface files. 

Has anyone successfully input CAT12 processed data into the CONN toolbox surface pipeline?

Andrew