help > Display issue with MRICron: image stretched z-direction
Sep 17, 2020  06:09 AM | antoninro
Display issue with MRICron: image stretched z-direction
Hello!

I am reading a nifti file obtained using dcm2niix from a set of 3DT1 images from a GE scanner.
Dcm2niix doesn't seems to produce any error nor warning (even in verbose mode).
However, the image seems stretched in the z-direction, which is also the slice direction (i.e. the 3DT1 was acquired in axial mode).

Note that opening the exact same nifti file with another viewer such as FSLEyes goes perfectly fine... by clicking "Info" I get the same slice number (about 300) and dim3 size (0.5mm) than using MRIcron.

Tested with MRIcron, latest version on MacOS and Linux (Ubuntu). Conversion done on Ubuntu with latest version of dcm2niix.

Please find a screenshot attached to this message.

Best

Antonin Rovai

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TitleAuthorDate
Display issue with MRICron: image stretched z-direction
antoninro Sep 17, 2020
antoninro Sep 17, 2020
Chris Rorden Sep 17, 2020
Chris Rorden Sep 17, 2020