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help > RE: Advanced axon tracing techniques and analysis
Oct 2, 2020 01:10 PM | Lorena Arancibia
RE: Advanced axon tracing techniques and analysis
Originally posted by Shane Simo:
Lorena
Hi folks,
2.) I haven't been able to find a Sholl analysis in Vaa3D and I've been having trouble getting SNT to work on FIJI. I saw in the forum that you folks were working on a Sholl analysis plugin. What's the status of that? Is it available to users? I would like to avoid using SNT if possible.
Hello, I am not sure there is a Sholl
analysis plugin for Vaa3D yet. I wrote a Matlab code for 3D Sholl
analysis which I used with traces generated in Vaa3D
which may be of help to you. You can download it from
here: https://github.com/AttwellLab/Microglia (It's the
GUISHoll folder). I hope it is useful.2.) I haven't been able to find a Sholl analysis in Vaa3D and I've been having trouble getting SNT to work on FIJI. I saw in the forum that you folks were working on a Sholl analysis plugin. What's the status of that? Is it available to users? I would like to avoid using SNT if possible.
Lorena
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Title | Author | Date |
---|---|---|
Shane Simo | Sep 30, 2020 | |
Lorena Arancibia | Oct 2, 2020 | |