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help > RE: fMRIPrep import
Nov 25, 2020 11:11 PM | Alfonso Nieto-Castanon - Boston University
RE: fMRIPrep import
Hi Nick
I took a look at your mydataset.mat file but I could not find anything there that would explain why the temporal covariate files would not be imported into CONN. Could you please send me your project log file (logfile.txt in your conn_* project folder) to see if that helps me figure out the issue here? (also if possible, please type "conn ver" to double-check that you are in fact using the 20a development version and please confirm if you are using the "New (import) from fMIRIPrep" menu in CONN's gui to import your data or some other procedure)
Thanks
Alfonso
Originally posted by Nick Bray:
I took a look at your mydataset.mat file but I could not find anything there that would explain why the temporal covariate files would not be imported into CONN. Could you please send me your project log file (logfile.txt in your conn_* project folder) to see if that helps me figure out the issue here? (also if possible, please type "conn ver" to double-check that you are in fact using the 20a development version and please confirm if you are using the "New (import) from fMIRIPrep" menu in CONN's gui to import your data or some other procedure)
Thanks
Alfonso
Originally posted by Nick Bray:
Hi
Alfonso,
Just following up regarding my previous post from last week.
Regards,
Nick
Originally posted by Nick Bray:
Just following up regarding my previous post from last week.
Regards,
Nick
Originally posted by Nick Bray:
Hi Alfonso,
Thank you for clarifying. Attached below is the resulting "mydataset.mat" file. As a novice to command line arguments, I want to ensure that I did follow your instructions correctly so just below is a copy of the exact command I executed:
>>dataset = conn_bidsdir('/Volumes/Samsung_T5/fmriprep20.2_conn_test'); save mydataset.mat dataset;
If this is correct, and once you have had a chance to review the .mat file then please let me know how best to proceed. Thank you for your ongoing help in this matter.
Regards,
Nick
Thank you for clarifying. Attached below is the resulting "mydataset.mat" file. As a novice to command line arguments, I want to ensure that I did follow your instructions correctly so just below is a copy of the exact command I executed:
>>dataset = conn_bidsdir('/Volumes/Samsung_T5/fmriprep20.2_conn_test'); save mydataset.mat dataset;
If this is correct, and once you have had a chance to review the .mat file then please let me know how best to proceed. Thank you for your ongoing help in this matter.
Regards,
Nick