Hello,

I am trying to do lesion network mapping using the data from the HCP (N=1018), and 31 lesions as seeds. I am doing this using a HPC (SLURM). 

My code runs well on 1 or several participants.
I configured the HPC option on conn as explained on yur website.
But as soon as I try to use the conn parralelisation option (for 4 subjects, 31 lesions, BATCH.parallel.N=24), the jobs fail. Please find my code enclosed. The job I submitted and the output below.

Could you help me?
Best regards,
Sophie

------------
JOB SUBMISSION:
#!/bin/bash -l
#SBATCH --chdir /scratch/betka
#SBATCH --ntasks 1
#SBATCH --cpus-per-task 4
#SBATCH --nodes 1
#SBATCH --mem 20G
#SBATCH --time 08:00:00
#SBATCH --mail-type=BEGIN,END,FAIL
#SBATCH --mail-user=xxxx

echo STARTING AT $(date)
module purge
module load matlab
cd /home/betka/Script_SCITAS/Preprocessing/Analyses_Step1
matlab -nodesktop -nojvm -batch 'run LesionNetworkMappingSoso_SCITAS_17122020v3.m'
echo FINISHING AT $(date)




OUTPUT
STARTING AT Fre Dez 18 15:59:42 CET 2020
[Warning: Directory already exists.]
[> In LesionNetworkMappingSoso_SCITAS_17122020v3 (line 11)
In run (line 91)]
saved /scratch/betka/18122020Analysis_3_4
saved /scratch/betka/18122020Analysis_3_4

ans =
struct with fields:
names: {1x31 cell}
dimensions: {1x31 cell}
deriv: {1x31 cell}
saved /scratch/betka/18122020Analysis_3_4
saved /scratch/betka/18122020Analysis_3_4
/scratch/betka/18122020Analysis_3_4.qlog/201218160009992/node.0001201218160009992.sh submitted
/scratch/betka/18122020Analysis_3_4.qlog/201218160009992/node.0001201218160009992.sh failed
/scratch/betka/18122020Analysis_3_4.qlog/201218160009992/node.0002201218160009992.sh submitted
/scratch/betka/18122020Analysis_3_4.qlog/201218160009992/node.0002201218160009992.sh failed
/scratch/betka/18122020Analysis_3_4.qlog/201218160009992/node.0003201218160009992.sh submitted
/scratch/betka/18122020Analysis_3_4.qlog/201218160009992/node.0003201218160009992.sh failed
/scratch/betka/18122020Analysis_3_4.qlog/201218160009992/node.0004201218160009992.sh submitted
/scratch/betka/18122020Analysis_3_4.qlog/201218160009992/node.0004201218160009992.sh failed
{Error using figure
This functionality is no longer supported under the -nojvm startup option. For
more information, see "Changes to -nojvm Startup Option" in the MATLAB Release
Notes. To view the release note in your system browser, run
web('http://www.mathworks.com/help/matlab/release-notes.html#btsurqv-6',
'-browser').
Error in conn_jobmanager>conn_jobmanager_gui (line 1222)
handles.hfig=figure('units','norm','position',[.3 .3 .4 .6],'name',sprintf('job
manager
(%s)',conn_jobmanager('getprofile')),'numbertitle','off','menubar','none','color','w','visible',visible,'handlevisibility','callback','tag',tag);
Error in conn_jobmanager (line 763)
[info,ok]=conn_jobmanager_gui(info,{},{},'nogui');
Error in conn_batch (line 1653)
if
~isfield(batch.parallel,'immediatereturn')||~batch.parallel.immediatereturn,
conn_jobmanager('waitfor',info); end
Error in LesionNetworkMappingSoso_SCITAS_17122020v3 (line 139)
conn_batch(BATCH);
Error in run (line 91)
evalin('caller', strcat(script, ';'));
}
FINISHING AT Fre Dez 18 16:00:15 CET 2020