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help > RE: HPC - SLURM - Parralellisation with conn
Dec 18, 2020 07:12 PM | Alfonso Nieto-Castanon - Boston University
RE: HPC - SLURM - Parralellisation with conn
Hi Sophie,
Thanks for the feedback. We are getting closer, the jobs are now running but it seems the conn_*.mat file could not be loaded correctly. Could you please try simply changing in the Lesion*.m script the line that reads:
BATCH.filename = [result,'allGroup_',num2str(length(pxList))];
to:
BATCH.filename = [result,'allGroup_',num2str(length(pxList)),'.mat'];
and see whether that seems to fix this issue?
Thanks
Alfonso
Originally posted by sophieb:
Thanks for the feedback. We are getting closer, the jobs are now running but it seems the conn_*.mat file could not be loaded correctly. Could you please try simply changing in the Lesion*.m script the line that reads:
BATCH.filename = [result,'allGroup_',num2str(length(pxList))];
to:
BATCH.filename = [result,'allGroup_',num2str(length(pxList)),'.mat'];
and see whether that seems to fix this issue?
Thanks
Alfonso
Originally posted by sophieb:
Hello and thanks for your quick reply.
Concerning 1), I configured the conn toolbox before trying to run my script. So it seems that it is not working and I will, from now on, add the line of code you suggested instead in all my scripts.
I added the 2 commands you suggested to my script, the jobs were parallelised but, still failed to run. Please find enclosed the zipped log file.
Your help would be very appreciated,
Best regards,
s.
Concerning 1), I configured the conn toolbox before trying to run my script. So it seems that it is not working and I will, from now on, add the line of code you suggested instead in all my scripts.
I added the 2 commands you suggested to my script, the jobs were parallelised but, still failed to run. Please find enclosed the zipped log file.
Your help would be very appreciated,
Best regards,
s.
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Title | Author | Date |
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sophieb | Dec 18, 2020 | |
sophieb | Jan 15, 2021 | |
sophieb | Jan 14, 2021 | |
sophieb | Jan 13, 2021 | |
sophieb | Jan 11, 2021 | |
Alfonso Nieto-Castanon | Jan 11, 2021 | |
Alfonso Nieto-Castanon | Jan 11, 2021 | |
sophieb | Jan 12, 2021 | |
Alfonso Nieto-Castanon | Jan 12, 2021 | |
sophieb | Jan 12, 2021 | |
Alfonso Nieto-Castanon | Jan 26, 2021 | |
sophieb | Jan 12, 2021 | |
sophieb | Jan 11, 2021 | |
sat2020 | Dec 18, 2020 | |
Alfonso Nieto-Castanon | Dec 18, 2020 | |
sophieb | Dec 18, 2020 | |
Alfonso Nieto-Castanon | Dec 18, 2020 | |
sophieb | Dec 18, 2020 | |
Alfonso Nieto-Castanon | Dec 18, 2020 | |
sophieb | Dec 19, 2020 | |
Alfonso Nieto-Castanon | Dec 19, 2020 | |
sophieb | Dec 21, 2020 | |
Alfonso Nieto-Castanon | Dec 21, 2020 | |
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sophieb | Dec 22, 2020 | |