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questions > RE: dcm2niix: issues with Siemens derived images
Dec 22, 2020 03:12 PM | Matthew Sherwood - Wright State University
RE: dcm2niix: issues with Siemens derived images
Unfortunately, I am not seeing any of this after running dcm2niix
from the git build code you gave:
Slices not stacked: dimensions vary across slices
Ignoring derived image(s) of series 7 /mnt/ss_rhb1/s3-mri-general/AFRL-Single_Exposure/raw_data/AE207_01/AE20701_1.MR.0007.0003.2018.04.04.16.57.38.341537.669208390.IMA
Slices not stacked: orientation varies (vNav or localizer?) [0.999111 0.0366578 -0.0208352 -0.0208212 -0.00076392 -0.999783] != [0.999111 0.0366578 -0.0208352 -0.0366658 0.999328 1.78683e-08]
Ignoring derived image(s) of series 7 /mnt/ss_rhb1/s3-mri-general/AFRL-Single_Exposure/raw_data/AE207_01/AE20701_1.MR.0007.0002.2018.04.04.16.57.38.341537.668942929.IMA
Ignoring derived image(s) of series 7 /mnt/ss_rhb1/s3-mri-general/AFRL-Single_Exposure/raw_data/AE207_01/AE20701_1.MR.0007.0004.2018.04.04.16.57.38.341537.669208424.IMA
Ignoring derived image(s) of series 7 /mnt/ss_rhb1/s3-mri-general/AFRL-Single_Exposure/raw_data/AE207_01/AE20701_1.MR.0007.0001.2018.04.04.16.57.38.341537.669205807.IMA
Ignoring localizer (sequence '*fl2d1') of series 2 /mnt/ss_rhb1/s3-mri-general/AFRL-Single_Exposure/raw_data/AE207_01/AE20701_1.MR.0002.0001.2018.04.04.16.57.38.341537.135667123.IMA
Ignoring localizer (sequence '*fl2d1') of series 2 /mnt/ss_rhb1/s3-mri-general/AFRL-Single_Exposure/raw_data/AE207_01/AE20701_1.MR.0002.0004.2018.04.04.16.57.38.341537.135667349.IMA
Ignoring localizer (sequence '*fl2d1') of series 2 /mnt/ss_rhb1/s3-mri-general/AFRL-Single_Exposure/raw_data/AE207_01/AE20701_1.MR.0002.0007.2018.04.04.16.57.38.341537.135667189.IMA
*** buffer overflow detected ***: /home/ubuntu/Downloads/dcm2niix/console/dcm2niix terminated
Aborted (core dumped)
Sending a link to the data in email.
Slices not stacked: dimensions vary across slices
Ignoring derived image(s) of series 7 /mnt/ss_rhb1/s3-mri-general/AFRL-Single_Exposure/raw_data/AE207_01/AE20701_1.MR.0007.0003.2018.04.04.16.57.38.341537.669208390.IMA
Slices not stacked: orientation varies (vNav or localizer?) [0.999111 0.0366578 -0.0208352 -0.0208212 -0.00076392 -0.999783] != [0.999111 0.0366578 -0.0208352 -0.0366658 0.999328 1.78683e-08]
Ignoring derived image(s) of series 7 /mnt/ss_rhb1/s3-mri-general/AFRL-Single_Exposure/raw_data/AE207_01/AE20701_1.MR.0007.0002.2018.04.04.16.57.38.341537.668942929.IMA
Ignoring derived image(s) of series 7 /mnt/ss_rhb1/s3-mri-general/AFRL-Single_Exposure/raw_data/AE207_01/AE20701_1.MR.0007.0004.2018.04.04.16.57.38.341537.669208424.IMA
Ignoring derived image(s) of series 7 /mnt/ss_rhb1/s3-mri-general/AFRL-Single_Exposure/raw_data/AE207_01/AE20701_1.MR.0007.0001.2018.04.04.16.57.38.341537.669205807.IMA
Ignoring localizer (sequence '*fl2d1') of series 2 /mnt/ss_rhb1/s3-mri-general/AFRL-Single_Exposure/raw_data/AE207_01/AE20701_1.MR.0002.0001.2018.04.04.16.57.38.341537.135667123.IMA
Ignoring localizer (sequence '*fl2d1') of series 2 /mnt/ss_rhb1/s3-mri-general/AFRL-Single_Exposure/raw_data/AE207_01/AE20701_1.MR.0002.0004.2018.04.04.16.57.38.341537.135667349.IMA
Ignoring localizer (sequence '*fl2d1') of series 2 /mnt/ss_rhb1/s3-mri-general/AFRL-Single_Exposure/raw_data/AE207_01/AE20701_1.MR.0002.0007.2018.04.04.16.57.38.341537.135667189.IMA
*** buffer overflow detected ***: /home/ubuntu/Downloads/dcm2niix/console/dcm2niix terminated
Aborted (core dumped)
Sending a link to the data in email.
Threaded View
Title | Author | Date |
---|---|---|
Matthew Sherwood | Dec 18, 2020 | |
Chris Rorden | Dec 23, 2020 | |
Chris Rorden | Dec 22, 2020 | |
Matthew Sherwood | Dec 22, 2020 | |
Chris Rorden | Dec 18, 2020 | |
Matthew Sherwood | Dec 21, 2020 | |