help > Structural Preprocessing
Feb 22, 2021  08:02 PM | Amy Roy
Structural Preprocessing
This is my first time using CONN and it seems that my structural preprocessing failed but I cannot figure out where or how to fix it. My structural scans were not skull stripped and the MNI boundaries are not aligned with the images at all (see attached) so I am assuming that the normalization never ran. In addition, for 5 participants, there is no gray matter ROI. Where can I look to figure out what went wrong? The whole process seemed to crash and I can't find a log file that would direct me to where the errors occurred. I am wondering if I should run structural segmentation and normalization alone as an individual step?
Thanks for any advice you can give me!