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help > Extract synapse data and neuron structure from eswc-files
Apr 10, 2021 06:04 PM | stevenhuysecom
Extract synapse data and neuron structure from eswc-files
Dear all,
I am Steven Huysecom, a biochemistry student currently working on neuron structures. For our project, we need to extract synaptic data on a neuron's structure. We have screened neuron images with the SynapseDetector-tool. Next, we combined both the SWC-output and the synapse data with the combiner tool in Vaa3D. This yields eswc-files.
We want now to extract both data on the neuron structure and the synapse location from this eswc-file with a self-written python script. The problem is, we do not know how the information about synapses is stored in the eswc files, and how to read them out. Hopefully, you guys can help me.
Thanks in advance!
Kind regards,
Steven Huysecom
I am Steven Huysecom, a biochemistry student currently working on neuron structures. For our project, we need to extract synaptic data on a neuron's structure. We have screened neuron images with the SynapseDetector-tool. Next, we combined both the SWC-output and the synapse data with the combiner tool in Vaa3D. This yields eswc-files.
We want now to extract both data on the neuron structure and the synapse location from this eswc-file with a self-written python script. The problem is, we do not know how the information about synapses is stored in the eswc files, and how to read them out. Hopefully, you guys can help me.
Thanks in advance!
Kind regards,
Steven Huysecom
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Title | Author | Date |
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stevenhuysecom | Apr 10, 2021 | |
Hanchuan Peng | Apr 25, 2021 | |