sdm-help-list
sdm-help-list > ROI mask not found
Jul 28, 2021 01:07 PM | Simon Dover
ROI mask not found
Hi all,
I'm trying to use an ROI mask for my meta-analysis. In the preprocessing step, I am using the command pp gray_matter,1,20,metaROI,20
Name of ROI mask (in shared directory): "mask_metaROI.nii.gz" It is in a gzip compressed format.
I get the following error; execution log pasted below:
Home dir /Users/Mol/.libsdm/sdm.conf
wParser warning: argument 'Voxel size' missing or incorrect, it will be set to '2'.
WARNING: Copy: source file '/private/var/folders/x1/sthv5r315w96zgl_46_pxcmm0000gn/T/AppTranslocation/C4E2076A-A632-4BB4-8546-6D958D94C20D/d/SdmPsiGui.app/Contents/MacOS/../Resources/bin/osx/../..//share/mask_metaROI_2mm.nii.gz' not found.
The program will close as this problem could cause fatal errors.
I have tried renaming the file to mask_metaROI_2mm.nii.gz , but I get a similar error message:
Home dir /Users/Mol/.libsdm/sdm.conf
wParser warning: argument 'Voxel size' missing or incorrect, it will be set to '2'.
WARNING: Copy: source file '/private/var/folders/x1/sthv5r315w96zgl_46_pxcmm0000gn/T/AppTranslocation/C4E2076A-A632-4BB4-8546-6D958D94C20D/d/SdmPsiGui.app/Contents/MacOS/../Resources/bin/osx/../..//share/mask_metaROI_2mm_2mm.nii.gz' not found.
The program will close as this problem could cause fatal errors.
Any guidance?
(One submission on the forum said they solved this issue by renaming the mask "mask_ROI_2mm.nii", i.e. specifying the voxel size in then mask and also that the mask file was zipped, by the .gz extension was not present in the file name. However, I can't try that as renaming the file automatically changes the file type, i.e. changing the file extension to .nii converts it to a NIFTI file, and this also results in the same errors as above.)
Any help would be hugely appreciated. Thank you!
I'm trying to use an ROI mask for my meta-analysis. In the preprocessing step, I am using the command pp gray_matter,1,20,metaROI,20
Name of ROI mask (in shared directory): "mask_metaROI.nii.gz" It is in a gzip compressed format.
I get the following error; execution log pasted below:
Home dir /Users/Mol/.libsdm/sdm.conf
wParser warning: argument 'Voxel size' missing or incorrect, it will be set to '2'.
WARNING: Copy: source file '/private/var/folders/x1/sthv5r315w96zgl_46_pxcmm0000gn/T/AppTranslocation/C4E2076A-A632-4BB4-8546-6D958D94C20D/d/SdmPsiGui.app/Contents/MacOS/../Resources/bin/osx/../..//share/mask_metaROI_2mm.nii.gz' not found.
The program will close as this problem could cause fatal errors.
I have tried renaming the file to mask_metaROI_2mm.nii.gz , but I get a similar error message:
Home dir /Users/Mol/.libsdm/sdm.conf
wParser warning: argument 'Voxel size' missing or incorrect, it will be set to '2'.
WARNING: Copy: source file '/private/var/folders/x1/sthv5r315w96zgl_46_pxcmm0000gn/T/AppTranslocation/C4E2076A-A632-4BB4-8546-6D958D94C20D/d/SdmPsiGui.app/Contents/MacOS/../Resources/bin/osx/../..//share/mask_metaROI_2mm_2mm.nii.gz' not found.
The program will close as this problem could cause fatal errors.
Any guidance?
(One submission on the forum said they solved this issue by renaming the mask "mask_ROI_2mm.nii", i.e. specifying the voxel size in then mask and also that the mask file was zipped, by the .gz extension was not present in the file name. However, I can't try that as renaming the file automatically changes the file type, i.e. changing the file extension to .nii converts it to a NIFTI file, and this also results in the same errors as above.)
Any help would be hugely appreciated. Thank you!
Threaded View
Title | Author | Date |
---|---|---|
Simon Dover | Jul 28, 2021 | |
Anton Albajes-Eizagirre | Aug 3, 2021 | |
Simon Dover | Aug 4, 2021 | |