Hi all, 

I'm currently preprocessing + denoising resting-state data using the default settings on Conn. My output after preprocessing is swauRS_01.nii however, I would like to denoise my data and use a custom ROI for the seed-based analysis. Specifically, I've segmented the thalamus and would like to use this as my seed. However, there doesn't seem to be a an option to use a custom seed following denoising. 

Any kind of advice would be much appreciated.

Kind regards,
Marsha