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Jul 26, 2022 09:07 AM | Greg Jefferis
RE: Error running munger on Mac
Dear Jessica,
Sandor is right that you should really be doing the registration in 3D.
However, the proximal problem is that the NRRD header is malformed for one or more of the 2D input images – basically it says that it's a 2D image but then it provides a 3d calibration. I am assuming that you wrote the image from Fiji/ImageJ and this looks like a bug in
https://github.com/fiji/IO/blob/3a9b1559...
Best,
Greg.
Originally posted by Sandor Kovacs:
Sandor is right that you should really be doing the registration in 3D.
However, the proximal problem is that the NRRD header is malformed for one or more of the 2D input images – basically it says that it's a 2D image but then it provides a 3d calibration. I am assuming that you wrote the image from Fiji/ImageJ and this looks like a bug in
https://github.com/fiji/IO/blob/3a9b1559...
Best,
Greg.
Originally posted by Sandor Kovacs:
Hi,
I would say align your samples to the template before you apply the projection, the registration command is voxel based and expects 3d geometry.
I would say align your samples to the template before you apply the projection, the registration command is voxel based and expects 3d geometry.
Threaded View
| Title | Author | Date |
|---|---|---|
| Jessica Eira | Jul 25, 2022 | |
| Sandor Kovacs | Jul 26, 2022 | |
| Greg Jefferis | Jul 26, 2022 | |