open-discussion
open-discussion > Brain Extraction in Batch - Best approach
Mar 29, 2023 03:03 PM | Subhasri Viswanathan
Brain Extraction in Batch - Best approach
Hi, I have a preprocessed functional scans for a longitudinal study but the anatomical images are not processed. I looked at
using BET tool in FSL and using the inbuilt features in MicroGL,
but I am unsure how to do these in batch. I have almost 400 scans
and I wanted to know how this process can be automated.