extending_nifti
extending_nifti > Store Series Time
Mar 24, 2011 09:03 PM | Cinly Ooi
Store Series Time
I'm not sure whether other people has the same problem. When
scanning, we collect subject responses (stimulus output) on another
computer. While the scanner collect physiological data for us, it
is organized by date and time. This means we have for a scan we
have data from multiple sources and we have to somehow bring it
together beforre we can do analysis. Our problem here is given a
massive pile of scans, stimulus output and physiological data, we
frequently have problems trying to match up the correct stimulus
output, physiological data with the scans. Current system mainly
relies on researcher to meticulously document everything had done
and to keep the filenames labelling consistent and correct. Given
the scanning days are always hectic, all of these goes out of the
window sometime during the day if not at the beginning of the day.
My backup strategy, is to match data based on their time stamp. For example, if your DMDX file captures two subjects when you are expecting only one, you use the time information to workout which subject's data is the correct one to use, and to move the misplaced one back to its original location.
Here is where we hit a problem. NifTI does not capture the time the data was acquired. This means going back to the DICOM files and start fishing for (0008,0031) Series Time. For us, it would be useful to capture this time as part of the NifTI header.
Perhaps it is bad management practise on our part, but our researchers normally do not write down the time the start scanning for particular task. Normally, the problem is actually to try to decide which two stimulus output files collected 6 minutes apart is the one to use.
Therefore, if future NifTI captures series time, it will be very useful for us. The series time need not be machine readable for our purpose.
My backup strategy, is to match data based on their time stamp. For example, if your DMDX file captures two subjects when you are expecting only one, you use the time information to workout which subject's data is the correct one to use, and to move the misplaced one back to its original location.
Here is where we hit a problem. NifTI does not capture the time the data was acquired. This means going back to the DICOM files and start fishing for (0008,0031) Series Time. For us, it would be useful to capture this time as part of the NifTI header.
Perhaps it is bad management practise on our part, but our researchers normally do not write down the time the start scanning for particular task. Normally, the problem is actually to try to decide which two stimulus output files collected 6 minutes apart is the one to use.
Therefore, if future NifTI captures series time, it will be very useful for us. The series time need not be machine readable for our purpose.
Threaded View
Title | Author | Date |
---|---|---|
Mark Jenkinson | Feb 28, 2011 | |
Jon Clayden | Feb 11, 2013 | |
Cinly Ooi | Mar 24, 2011 | |
Andrew Janke | Mar 25, 2011 | |
Jon Clayden | Mar 5, 2011 | |
Satrajit Ghosh | Mar 5, 2011 | |
Satrajit Ghosh | Feb 28, 2011 | |
Andrew Janke | Mar 1, 2011 | |
Stephen Strother | Mar 5, 2011 | |
Gael Varoquaux | Feb 28, 2011 | |