  
  Section of Biomedical Image Analysis
  Goddard Building
  3701 Hamilton Walk, 6th Floor
  Philadelphia, PA 19104

  Web:   http://www.cbica.upenn.edu/sbia/
  Email: sbia-software at uphs.upenn.edu

  Copyright (c) 2015 University of Pennsylvania. All rights reserved.
  See http://www.cbica.upenn.edu/sbia/software/license.html or COPYING file.



INTRODUCTION
============

  This is the installation guide for SCPLearn software. Please make sure you have the required 
  dependencies as illustrated in README.md before proceeding.

Quick Summary of Installation
=============================

This software has been primarily implemented for Linux operating systems.

----------------
 Dependencies
----------------
- MATLAB Compiler mcc version 5.2 (R2014B)
- MATLAB R2014B
- Python 2.7.9
- Python library numpy 1.7.2
- Python library scipy 0.15.1
- Python library pandas 0.16.2
- Python library nibabel 2.0.1

Make sure all dependencies are met before proceeding with install.

-------------------------------------
Generating standalone executables
-------------------------------------
1) Within the src/ directory, run makeAll.py with the location of the install directory as the argument:

makeAll.py <installDir>

2) Add the install directory to your path by running the following command. 

Replace ${installDir} with the location of the install directory from step 1 above.

export PATH=${PATH}:${installDir}

----------------------------
Generating code documentation
----------------------------

Run "doxygen Doxyfile" from the parent directory.
The documentation is built in "docs/*". Open "docs/index.html" in your favorite browser to begin.
